|
Name : srtC (HMPREF0421_21113) Accession : YP_003986218.1 Strain : Gardnerella vaginalis ATCC 14019 Genome accession: NC_014644 Putative virulence/resistance : Unknown Product : sortase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3764 EC number : - Position : 1332356 - 1333486 bp Length : 1131 bp Strand : - Note : COG: COG3764; Pfam: PF04203; InterPro: IPR005754 DNA sequence : ATGAAGCTAGCCGATATTAGCAATTTGTGCCACTCGTTGAGTGAGCGCGCTGTTGCTAAATTGTTTAAGAATAAGGCGAA GCGTACCTCCAATGTGGCTGGCACGAGCAGTGTGGCTGGTGCGAGTGGTTTGCTAGCGGATAAGTCGCAAGCAACCGAAG AGCAAATTCCACGATCCAACTCAAGCAAAAATATAAACCAAAATACACTTAAAACTAAAAAAATAACTAAAAAGAAAAGC ACACTGATGCGTATCTTAGAGCCGATTGCGCTGGTTCTTGCAGGCATTTTGTGCTTTAGCTACCCTGTGTGCTCAACGCT GTGGAACAATCACGTTTCGAAGGAGATATCGACAGCGTACGACAAGTATAATCACGATCAGGCTGGCGACGTGCGGCGCG CGCACATTCGCGGCGCAAAGCGCTACAACGCAACGCGCAAGGATATGCTCACGCGCGACCCGTACGGCGGCGACGGTCAG GAAGATATAACTAACACGCCTGGATACAAGCGTTATCTTAAAACGCTTGAGGAGCCGATGGGCATTATTGGCATTGTAAA AATTCCGAAGATTGGCGTAAAGCTGCCGATTTACCACGGTACAAAAGAAGATACGCTTGCGCGAGGCGCGGGGCACTTGT ATGGCACGGATTTGCCAGTGGGCGGCAAGGGGCGGCATACTGTGATTACCGCGCACACTGGTTTGCCGAACGCAACCATG TTTGATTCGCTAACAGACCTTAAAAAGGGTGACTACTTTTATCTTGATGTGCAAGGGGAGACCTTGCGTTACAAGGTGTT TCGTATAAACGTGGTGGATCCGCACGATATAAGTTTGCTGCAGCGCGAGAAGGGGCGCGATTTAGCTACGCTGCTTACTT GTACGCCGTATGGTGTGAACTCGCATAGGTTGCTGGTTACGGGGTATCGTGTGCTGCCGGACCCTGTTGCGCCGCCAGAA GACCATGTGCAATGGCCGCTATGGATGACGTTGTTTGTTATTGCGATGATATTCTCGGCGGCGATTCTTGCCATGATGAT CACTGTGGTTGCTGGTAAGAGGCGGCGTAAGTGGGATATTCGCGGCAAGCACATACTGTGGGTTGGGCGCGGCGTGGTTA AACTGCGCTAG Protein sequence : MKLADISNLCHSLSERAVAKLFKNKAKRTSNVAGTSSVAGASGLLADKSQATEEQIPRSNSSKNINQNTLKTKKITKKKS TLMRILEPIALVLAGILCFSYPVCSTLWNNHVSKEISTAYDKYNHDQAGDVRRAHIRGAKRYNATRKDMLTRDPYGGDGQ EDITNTPGYKRYLKTLEEPMGIIGIVKIPKIGVKLPIYHGTKEDTLARGAGHLYGTDLPVGGKGRHTVITAHTGLPNATM FDSLTDLKKGDYFYLDVQGETLRYKVFRINVVDPHDISLLQREKGRDLATLLTCTPYGVNSHRLLVTGYRVLPDPVAPPE DHVQWPLWMTLFVIAMIFSAAILAMMITVVAGKRRRKWDIRGKHILWVGRGVVKLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| srtB | YP_005137208.1 | putative fimbrial associated sortase-like protein | Not tested | Not named | Protein | 2e-43 | 42 |
