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Name : lysS2 (HMPREF0733_10955) Accession : YP_003983846.1 Strain : Rothia dentocariosa ATCC 17931 Genome accession: NC_014643 Putative virulence/resistance : Unknown Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1009759 - 1013091 bp Length : 3333 bp Strand : - Note : COG: COG1190; Pfam: PF04329,PF04330,PF04331,PF01336,PF00152; InterPro: IPR002313 DNA sequence : ATGTACCGAGTGATTGGTGGAGAACGGTTTATGGCACATCAGAAACAGGGCACAGAAGCCCATCACACGACATCACGCTA TGCGGAAATCATCGCCCGCTGGGTTATCGGTATCTACTCAATCGCAACAATTCTGACGCTTTTCACCTGGATTATTTCCC CGCTTCGCAGGGGCCACGGGTTCACCTGGTGGGAAATCACCGCGAGCCTGCTCAACATCCCATCAAGTCATACGCTGGTG AGCGCAGTCATCATGGTGGTCATGACGTCCGCCCTGATCACCCGTAAACGGGCCGCCCTCTACGCCGTCATTTTCTTTCA AGTCATCGGCATCCTCATCGGAACACGAAGCGCGCTTCTGCTCTTCTTCCCCGATAACGTGATGCCGAGCGAAGAATTTT TCTCCTCCACGCTCGACACCGTGGCTATTATCGTGGCGGCTATCTTTATTCCGCTTCTCATCCTGGCACGCTCTGCTTTC CCGGCGCATATAGGCCGAATTTCATGGGTATTGGCAACCGTGGTCTTCCTCGGCGGGCTAACGGTGACAACCCTGCTGGC CTGGTATTTTGGGCATCACGTGCCGGGAGTTACGGTTCCCCACCTGCTCAAGCAGGGGTTAGGGCTCGATAGTTTTCCCG AGCTCAAGGGTGCAAACCCGGGCGCCACGGTGGTGGGGGCAGCATCCGTGTTCTACGGAATTTTTGCACTGATCGCGGTG TATGTGGTGGTGCGGGGGTACCGTGTCCCCAATACCTGGACCGCCGATCGGGAATTGCGCCTGCGCGAACTTTTACAGGA GTATGGCGGGAACGATTCACTCTCGTACTTTGCAACACGCCGCGATAAACAGGTGATTTTCTCGGCGGATATGCGTGCCG CTGTCACCTACAGGCAAGTGGGTTCGGTATGTTTGGCGTCCAGCGACCCGGTGGGCGATCCGGCGTCCTGGGGTTCCGCA ATCGACCGGTGGATGTACCAGGTGCGCCGCTACGGGTGGATTCCCGCCGCCATCAGCGTGAGCGAAGACGGCGCCAGAGC CTTCGCACGCCGGGGACTGGGCATAATCCGCATGGGGGACGAAGCCATTCTAGAGGTCTCACGTTTTAGCCTGAACAATA CTTCGCTTACGGAGGTACGCCACGCCCACCAGCGGGTTCGTAAGGCCGGTTACACACTGAAAATCTGCAGGCATCGTGAG CTTTCACCCGAGCAGCTGCACGAGGTGGAAAATAACGTGAACGCTTGGCGTCACGGCAAGGTTGAGCGCGGGTTCTCGAT GGCGCTCAACAGGCTCTCAGACCCCGCAGACGGTCGCAATCTGCTTGTTTCGGCGCATGATTCTGCTGGCACAATGGTTG CCCTCCTCTCATTCGTGCCGTGGGGCCGCACCGGCATATCGCTGGATGTGATGCGCCGCTCCCCCGACAGCCCCAACGGC ATCGTGGAATATATGGTTGCCCAGCTTATGGAGGATGCCCCCGACTACGGCATCACGCGTGTTTCACTGAACTTTGCTAT GTTCCGCCATGTGTATGAGAACGCAGATCAGTTCGGCGCTAATGCCTGGAGCAGGTTCGCCTCTCGGTCACTGGGGGTTT TAGACAGGTTCCTTCAGTTGGAGAGACTGTACCGCTTCAACCTCAAGTTCGCCCCGGAGTGGATGCCGCGCTATATGGTT GCGGAACCGACGCTGGCTTTCCTGAACGTTGCGGCGGCGGCCGGGGTTGCCGAGGGCTTCCTGCCTGATTTTTCGGCACG TAAACAGCGCCATGAAGTGCACCGCCTGACCGAAGACCAGATCGCGCGAGTGCACGAGATCGAGCGTATGCATCCGGGTG AGGCGCAGGCCCCCGAACACCGCTTCAGCGATCAGACCAAGCACCGTATTCGTCACCTGCAGATGCTTCGTGATGTCGGC ATGAACCCGTACCCGCTGGGAGTCACGTGCGAGTATTCGACGGTGCAGGTGCACGATGGGCTGAGCGGCCATACGCTTCC GAGCAGGGAGTTTACCCTATCGGGCAGGGTGCGGTTTATTCGCAACCACGGCGGGGTTATCTTCCTGACCCTGTCTGAGG AAGGCAAACAGGTACAGATTATTGCCGAGCGCAGCCTTGTGAGTGAGCGCGAGTTTCGGCTTCTCAAGTCCGCTGTCGAT ACGGGTGATATTCTGCTCGTGACCGGCACGGCGGGGACTAGCCGCACCGGAACCGCATCCGTCATTGTGCATAGCTGGCA GATGGCGGCGAAGTGTCTGCACCCCATTCCGTACGGAGCGTTGAATGATCCGGAGGCGCGCATCCGCAAACGCTCGACCG ACCTGTTGGTGCATCCGCAGCAGCTTGAAAACCTTCGGATGCGCTCCTCACTGATCACTGCCATTCGCCGCACGCTTGAT GATGCAGGGTTCACCGAGGTTGAGACCCCGATTCTGAATACTATTCATGGCGGTGCGAGCGCGCGCCCCTTCAAAACCTT TATCAACGCCTATGGTGCGGATTTGACGCTTCGCATTGCGCCCGAGCTGTATCTTAAGCGCCTGGTGGTTGGCGGTTTGG GCGCGGTTTATGAGTTAGGGCGGGATTTTCGCAACGAAGGCGCGGATGCCACCCATAACCCGGAGTTCACGGTGTTGGAG GCTTATAAGCCTTACGCAGATTACACGGTCATGCGCAAGCTTACTGAAACGCTCATCAAGAATGCCGCCCGGGCCGTCTA TGGTTCTGAGGTACTTCCGCTGGGCGAGAAGGGCAGTACCGAGCGTACTCTCACGGATGTTTCGGGTGAGTGGCGGGCAG TTTCGGTATGCGAGGCCCTTTCGCGTGCGCTGGGGCGCGATATTTCGAGTGAAACAGATTTTGAGACTTTGCTTGAGCTG GCACATGAGCATCAGATTCATGTGCGTGATGACATGGGCGCGGGCGCCATTCTTGAGGAGCTTTACGGCGAGCTGGTTGA GGCGAAGACCGTGTTCCCCACGTTTTATACGGATTTTCCGGTGGAGACCTCTCCCCTGGCGGGTGCGCATCGCAGCGAGC CGCATCTGGTGGAACGCTGGGATTTGGTGATTAACGGTATGGAGATGGGAACCGCCTATTCCGAGATGACGGATGCTTTA GAACAGCGCCGCCGCCTGACCGAGCAGTCTCTCAAGGCCGCGGCGGGAGACCCGGAAGCCATGCAGATTGATGAGGATTT TCTGTACGCCCTTGAGACCGGGCTTGTCCCGACGGGCGGGTTGGGCATCGGCATTGACCGTTTGGCGATGCTCATGGCAC AGACCCAGATTCGCGGGGTGCTTTCTTTCCCGTTTGTTAAACCCGTGAAGTAG Protein sequence : MYRVIGGERFMAHQKQGTEAHHTTSRYAEIIARWVIGIYSIATILTLFTWIISPLRRGHGFTWWEITASLLNIPSSHTLV SAVIMVVMTSALITRKRAALYAVIFFQVIGILIGTRSALLLFFPDNVMPSEEFFSSTLDTVAIIVAAIFIPLLILARSAF PAHIGRISWVLATVVFLGGLTVTTLLAWYFGHHVPGVTVPHLLKQGLGLDSFPELKGANPGATVVGAASVFYGIFALIAV YVVVRGYRVPNTWTADRELRLRELLQEYGGNDSLSYFATRRDKQVIFSADMRAAVTYRQVGSVCLASSDPVGDPASWGSA IDRWMYQVRRYGWIPAAISVSEDGARAFARRGLGIIRMGDEAILEVSRFSLNNTSLTEVRHAHQRVRKAGYTLKICRHRE LSPEQLHEVENNVNAWRHGKVERGFSMALNRLSDPADGRNLLVSAHDSAGTMVALLSFVPWGRTGISLDVMRRSPDSPNG IVEYMVAQLMEDAPDYGITRVSLNFAMFRHVYENADQFGANAWSRFASRSLGVLDRFLQLERLYRFNLKFAPEWMPRYMV AEPTLAFLNVAAAAGVAEGFLPDFSARKQRHEVHRLTEDQIARVHEIERMHPGEAQAPEHRFSDQTKHRIRHLQMLRDVG MNPYPLGVTCEYSTVQVHDGLSGHTLPSREFTLSGRVRFIRNHGGVIFLTLSEEGKQVQIIAERSLVSEREFRLLKSAVD TGDILLVTGTAGTSRTGTASVIVHSWQMAAKCLHPIPYGALNDPEARIRKRSTDLLVHPQQLENLRMRSSLITAIRRTLD DAGFTEVETPILNTIHGGASARPFKTFINAYGADLTLRIAPELYLKRLVVGGLGAVYELGRDFRNEGADATHNPEFTVLE AYKPYADYTVMRKLTETLIKNAARAVYGSEVLPLGEKGSTERTLTDVSGEWRAVSVCEALSRALGRDISSETDFETLLEL AHEHQIHVRDDMGAGAILEELYGELVEAKTVFPTFYTDFPVETSPLAGAHRSEPHLVERWDLVINGMEMGTAYSEMTDAL EQRRRLTEQSLKAAAGDPEAMQIDEDFLYALETGLVPTGGLGIGIDRLAMLMAQTQIRGVLSFPFVKPVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-166 | 41 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-167 | 41 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-167 | 41 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 5e-167 | 41 |
