Gene Information

Name : clpC (HMPREF0733_10703)
Accession : YP_003983595.1
Strain : Rothia dentocariosa ATCC 17931
Genome accession: NC_014643
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease ATP-binding subunit ClpC
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 760248 - 762800 bp
Length : 2553 bp
Strand : -
Note : COG: COG0542; Pfam: PF02861,PF00004,PF02151,PF07724; InterPro: IPR013093

DNA sequence :
ATGTTTGAACGCTTTACCGACCGAGCTCGGCGCGTTGTGGTGCTTGCCCAAGAAGAAGCACGCATGCTCAACCACAATTA
CATCGGCACCGAGCATCTGCTGCTCGGGCTGATTCACGAGGGCGAGGGCATCGGTGCCCGTGCTCTTGAGTCCCTCGGGG
TTACCCTGAATGCCGTGCGCGAACAGGTGCAGAGCATTGTGGGCCCCAGCCCCCAGGCGCCAAGCGGTCACATTCCCTTC
ACCCCGCGCGCCAAGAAGGTCCTCGAACTTTCCATGCGTGAGGCCATTCAGCTTAACCACGGTTATATCGGCACCGAACA
TATCCTGCTGGGCATGGTGCGCGCCTCCGAGGGCGTGGCAAACCAGGTTCTCTCCAAAGTAGGCGTGCAGGGCGCCGAGG
TTCGCCAGGCCGTGATGGATCTTATTTCCGGATACCCCGGCAACAACGAGAATAAGGAAACCGCCGGTGTGGGCGCAGGC
AACTCCCGTGAGGGCACCCCGGCGGGCTCGACAATTCTCGATCAGTTCGGGCGTAACCTCACCGCCGCCGCACGCGAAGG
TCAGCTTGACCCGGTGATTGGTCGTCACCACGAGATGGAACGCGTAATGCAGGTTCTCTCACGCCGCACCAAGAACAACC
CCGTGCTTATCGGCGAACCCGGTGTCGGTAAAACCGCCGTTGTTGAGGGCTTGGCGCAGGCCATCGTACACGGCGATGTT
CCCGAAACTCTCAAAGATAAGCACCTGTACACCCTGGATTTGGGATCCTTGGTCGCGGGCTCTCGGTACCGCGGTGACTT
TGAGGAACGCCTCAAGAAGGTGCTCAAGGAGATTCGCACCCGCGGCGACATTATCCTGTTCATTGACGAGATTCACACTC
TCGTCGGTGCCGGTGCCGCAGAGGGCGCTATCGACGCCGCCTCCATCCTGAAGCCGATGCTGGCTCGCGGCGAGTTGCAG
ACCATCGGTGCCACCACCTTGGACGAGTATCGCAAGCACATTGAGAAGGACGCCGCACTGGAACGCCGCTTCCAGCCAAT
TCAGGTGGACGAGCCTTCTCAAGAGCTCGCCGTGCAGATTCTTAAGGGTGTGCGTGATAAGTACGAGGCTCACCACCGCG
TAACCATTACCGACGAGTCGATCGAGGCTGCCGTGAACTTGGCGGCACGCTATATTTCCGACCGATTCTTGCCGGATAAG
GCCGTTGACCTGATTGATGAGGCGGGCGCTCGCCTGCGCATCAAGCGGATGACCGCCCCGCCCGAGATTAAGATTCTTGA
CGAGAAGGCGTCGAAGCTGCGCACGCAGAAGGAAGACGCTATCAAGGGCCAGGATTACGAGAAGGCCGCCGCGCTGCGCG
ATCAAGAGCAAAAGGTACTCGCCGAAAAGGCCGAGGCTGAGAAGGCTTGGCGCGAAAACGGCGATGCTTTCGGCGAGGTG
ACCCCCGAGGTTATCTCTGAGGTGCTCGCATCCTCAACGGGTGTTCCGGTGTACAAGATCACCGAGGAAGAGTCCTCGCG
TCTGATCAAGATGGAGGACGAGCTGCACAAGCGCGTGATCGGTCAAGACAACGCTATCAAGGCTCTCTCCCGTGCGATTC
GCCGCACCCGTGCCGGTCTGAAGGATCCGCGCCGCCCCGGTGGCTCGTTTATCTTCGCTGGTCCAACCGGTGTTGGTAAG
ACCGAGCTTGCGAAAGCTTTGGCGGAATTCCTCTTCGGCGATGAAGACGCCCTGATTACCCTGGATATGTCCGAATACCA
GGAGAAGCACACTGTGTCTCGACTCTTCGGTGCGCCTCCCGGGTACGTGGGTTACGACGAGGGCGGTCAGCTGACCGAGA
AGGTGCGCCGCAAGCCGTTCTCGGTGGTGCTCTTCGATGAGGTCGAGAAGGCTCACACCGATCTCTTCAACTCGCTGCTG
CAGATTCTTGAAGACGGCCGCCTGACCGACTCACAGGGTCGCGTGGTGGACTTCAAGAACACCGTGATCATTATGACCAC
GAACCTCGGCTCGCGCGATGTGAACCGTCGCGTTCCCGTGGGCTTTCAGGCGATGGATCACGGCGATGCCGATTACGAGC
GCATGCAGGCCCGCGTGATGGAGAACCTCAAGGAGCACTTCCGCCCCGAGTTCCTGAACCGCGTGGACGATATTATCGTG
TTCCCGCAGCTCTCCGAGAACGAGATTCTGCAGATCGTGGATCTCTTTGTGGGCCGGTTGGCAAAGCGCTTGGCAGATCA
GGAAATGTCGATCGAGCTTACGGATGCCGCAAAGGTTCTCATGGCCTCGAAGGGTTACGACCCGGCGATGGGCGCCCGCC
CGCTGCGCCGCGAAATGCAGCGTAATATTGAGGATGCTCTCTCCGAGAAGATCCTCTTCGGCGAAATCAAGCCCGGCGAG
AAGATTACCGTGGGTGTCGAGGGTGAAGGCGACGATGCGAAGTTCGTCTTCTCCTCGCAGCAGATGCGGGATTTACCCCT
GGAGACTGTCAATAAGATGGCGGAGTCTGCCGTGGAAGAAGCCGAGCAGATTACCGGAGGGGCATCTGACTAG

Protein sequence :
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVREQVQSIVGPSPQAPSGHIPF
TPRAKKVLELSMREAIQLNHGYIGTEHILLGMVRASEGVANQVLSKVGVQGAEVRQAVMDLISGYPGNNENKETAGVGAG
NSREGTPAGSTILDQFGRNLTAAAREGQLDPVIGRHHEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGDV
PETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQ
TIGATTLDEYRKHIEKDAALERRFQPIQVDEPSQELAVQILKGVRDKYEAHHRVTITDESIEAAVNLAARYISDRFLPDK
AVDLIDEAGARLRIKRMTAPPEIKILDEKASKLRTQKEDAIKGQDYEKAAALRDQEQKVLAEKAEAEKAWRENGDAFGEV
TPEVISEVLASSTGVPVYKITEEESSRLIKMEDELHKRVIGQDNAIKALSRAIRRTRAGLKDPRRPGGSFIFAGPTGVGK
TELAKALAEFLFGDEDALITLDMSEYQEKHTVSRLFGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEVEKAHTDLFNSLL
QILEDGRLTDSQGRVVDFKNTVIIMTTNLGSRDVNRRVPVGFQAMDHGDADYERMQARVMENLKEHFRPEFLNRVDDIIV
FPQLSENEILQIVDLFVGRLAKRLADQEMSIELTDAAKVLMASKGYDPAMGARPLRREMQRNIEDALSEKILFGEIKPGE
KITVGVEGEGDDAKFVFSSQQMRDLPLETVNKMAESAVEEAEQITGGASD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 67
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-101 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpC YP_003983595.1 ATP-dependent Clp protease ATP-binding subunit ClpC VFG0079 Protein 0.0 59
clpC YP_003983595.1 ATP-dependent Clp protease ATP-binding subunit ClpC VFG0080 Protein 9e-154 49