Name : clpC (HMPREF0733_10703) Accession : YP_003983595.1 Strain : Rothia dentocariosa ATCC 17931 Genome accession: NC_014643 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 760248 - 762800 bp Length : 2553 bp Strand : - Note : COG: COG0542; Pfam: PF02861,PF00004,PF02151,PF07724; InterPro: IPR013093 DNA sequence : ATGTTTGAACGCTTTACCGACCGAGCTCGGCGCGTTGTGGTGCTTGCCCAAGAAGAAGCACGCATGCTCAACCACAATTA CATCGGCACCGAGCATCTGCTGCTCGGGCTGATTCACGAGGGCGAGGGCATCGGTGCCCGTGCTCTTGAGTCCCTCGGGG TTACCCTGAATGCCGTGCGCGAACAGGTGCAGAGCATTGTGGGCCCCAGCCCCCAGGCGCCAAGCGGTCACATTCCCTTC ACCCCGCGCGCCAAGAAGGTCCTCGAACTTTCCATGCGTGAGGCCATTCAGCTTAACCACGGTTATATCGGCACCGAACA TATCCTGCTGGGCATGGTGCGCGCCTCCGAGGGCGTGGCAAACCAGGTTCTCTCCAAAGTAGGCGTGCAGGGCGCCGAGG TTCGCCAGGCCGTGATGGATCTTATTTCCGGATACCCCGGCAACAACGAGAATAAGGAAACCGCCGGTGTGGGCGCAGGC AACTCCCGTGAGGGCACCCCGGCGGGCTCGACAATTCTCGATCAGTTCGGGCGTAACCTCACCGCCGCCGCACGCGAAGG TCAGCTTGACCCGGTGATTGGTCGTCACCACGAGATGGAACGCGTAATGCAGGTTCTCTCACGCCGCACCAAGAACAACC CCGTGCTTATCGGCGAACCCGGTGTCGGTAAAACCGCCGTTGTTGAGGGCTTGGCGCAGGCCATCGTACACGGCGATGTT CCCGAAACTCTCAAAGATAAGCACCTGTACACCCTGGATTTGGGATCCTTGGTCGCGGGCTCTCGGTACCGCGGTGACTT TGAGGAACGCCTCAAGAAGGTGCTCAAGGAGATTCGCACCCGCGGCGACATTATCCTGTTCATTGACGAGATTCACACTC TCGTCGGTGCCGGTGCCGCAGAGGGCGCTATCGACGCCGCCTCCATCCTGAAGCCGATGCTGGCTCGCGGCGAGTTGCAG ACCATCGGTGCCACCACCTTGGACGAGTATCGCAAGCACATTGAGAAGGACGCCGCACTGGAACGCCGCTTCCAGCCAAT TCAGGTGGACGAGCCTTCTCAAGAGCTCGCCGTGCAGATTCTTAAGGGTGTGCGTGATAAGTACGAGGCTCACCACCGCG TAACCATTACCGACGAGTCGATCGAGGCTGCCGTGAACTTGGCGGCACGCTATATTTCCGACCGATTCTTGCCGGATAAG GCCGTTGACCTGATTGATGAGGCGGGCGCTCGCCTGCGCATCAAGCGGATGACCGCCCCGCCCGAGATTAAGATTCTTGA CGAGAAGGCGTCGAAGCTGCGCACGCAGAAGGAAGACGCTATCAAGGGCCAGGATTACGAGAAGGCCGCCGCGCTGCGCG ATCAAGAGCAAAAGGTACTCGCCGAAAAGGCCGAGGCTGAGAAGGCTTGGCGCGAAAACGGCGATGCTTTCGGCGAGGTG ACCCCCGAGGTTATCTCTGAGGTGCTCGCATCCTCAACGGGTGTTCCGGTGTACAAGATCACCGAGGAAGAGTCCTCGCG TCTGATCAAGATGGAGGACGAGCTGCACAAGCGCGTGATCGGTCAAGACAACGCTATCAAGGCTCTCTCCCGTGCGATTC GCCGCACCCGTGCCGGTCTGAAGGATCCGCGCCGCCCCGGTGGCTCGTTTATCTTCGCTGGTCCAACCGGTGTTGGTAAG ACCGAGCTTGCGAAAGCTTTGGCGGAATTCCTCTTCGGCGATGAAGACGCCCTGATTACCCTGGATATGTCCGAATACCA GGAGAAGCACACTGTGTCTCGACTCTTCGGTGCGCCTCCCGGGTACGTGGGTTACGACGAGGGCGGTCAGCTGACCGAGA AGGTGCGCCGCAAGCCGTTCTCGGTGGTGCTCTTCGATGAGGTCGAGAAGGCTCACACCGATCTCTTCAACTCGCTGCTG CAGATTCTTGAAGACGGCCGCCTGACCGACTCACAGGGTCGCGTGGTGGACTTCAAGAACACCGTGATCATTATGACCAC GAACCTCGGCTCGCGCGATGTGAACCGTCGCGTTCCCGTGGGCTTTCAGGCGATGGATCACGGCGATGCCGATTACGAGC GCATGCAGGCCCGCGTGATGGAGAACCTCAAGGAGCACTTCCGCCCCGAGTTCCTGAACCGCGTGGACGATATTATCGTG TTCCCGCAGCTCTCCGAGAACGAGATTCTGCAGATCGTGGATCTCTTTGTGGGCCGGTTGGCAAAGCGCTTGGCAGATCA GGAAATGTCGATCGAGCTTACGGATGCCGCAAAGGTTCTCATGGCCTCGAAGGGTTACGACCCGGCGATGGGCGCCCGCC CGCTGCGCCGCGAAATGCAGCGTAATATTGAGGATGCTCTCTCCGAGAAGATCCTCTTCGGCGAAATCAAGCCCGGCGAG AAGATTACCGTGGGTGTCGAGGGTGAAGGCGACGATGCGAAGTTCGTCTTCTCCTCGCAGCAGATGCGGGATTTACCCCT GGAGACTGTCAATAAGATGGCGGAGTCTGCCGTGGAAGAAGCCGAGCAGATTACCGGAGGGGCATCTGACTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHLLLGLIHEGEGIGARALESLGVTLNAVREQVQSIVGPSPQAPSGHIPF TPRAKKVLELSMREAIQLNHGYIGTEHILLGMVRASEGVANQVLSKVGVQGAEVRQAVMDLISGYPGNNENKETAGVGAG NSREGTPAGSTILDQFGRNLTAAAREGQLDPVIGRHHEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGDV PETLKDKHLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQ TIGATTLDEYRKHIEKDAALERRFQPIQVDEPSQELAVQILKGVRDKYEAHHRVTITDESIEAAVNLAARYISDRFLPDK AVDLIDEAGARLRIKRMTAPPEIKILDEKASKLRTQKEDAIKGQDYEKAAALRDQEQKVLAEKAEAEKAWRENGDAFGEV TPEVISEVLASSTGVPVYKITEEESSRLIKMEDELHKRVIGQDNAIKALSRAIRRTRAGLKDPRRPGGSFIFAGPTGVGK TELAKALAEFLFGDEDALITLDMSEYQEKHTVSRLFGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEVEKAHTDLFNSLL QILEDGRLTDSQGRVVDFKNTVIIMTTNLGSRDVNRRVPVGFQAMDHGDADYERMQARVMENLKEHFRPEFLNRVDDIIV FPQLSENEILQIVDLFVGRLAKRLADQEMSIELTDAAKVLMASKGYDPAMGARPLRREMQRNIEDALSEKILFGEIKPGE KITVGVEGEGDDAKFVFSSQQMRDLPLETVNKMAESAVEEAEQITGGASD |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 67 |
STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-101 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
clpC | YP_003983595.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
clpC | YP_003983595.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 9e-154 | 49 |