|
Name : gabD (HMPREF0733_11938) Accession : YP_003984829.1 Strain : Rothia dentocariosa ATCC 17931 Genome accession: NC_014643 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 2160274 - 2161746 bp Length : 1473 bp Strand : - Note : COG: COG1012; Pfam: PF00171; InterPro: IPR015590 DNA sequence : ATGGAACAACATCTTCAAGAACTCATTAACAAAATACCCACTGGGCTACTCATCGGCGACACTTGGCGTGAAGGATCCGC AGGGGAGACGTTCGATGTCCTCAACCCAGCGACCGAAGAAAAGCTCACGGCCTTAGCCTCAGCAACACCTGAAGACGCAA TAGCAGCCCTAGACGCAGCATGCCAGGTTCAAGACCAATGGGCACACACGCCGCCGCGTGAACGTGCAGAAATACTACGA CGGGCATACGACCTCATCACCGATCGCTCCGAAGAATTCGCCACCCTCATGACCCTCGAAATGGGAAAACCCCTCGCAGA ATCACGAGGAGAAGTAGTCTACGGAGCCGAATTCTTACGATGGTTCTCCGAAGAAACCGTACGCGACTACGGACGCTACC AGCCCACGCCCGAAGGTAAAAACCAAATACTGGTAAAGCATAAACCTGTAGGACCATGCCTACTCATCACCCCATGGAAC TTCCCACTAGCCATGGCAACACGCAAAGCCGGAGCTGCAATAGCAGCAGGATGTACAATGATCCTCAAACCTGCACGGCT CACACCCCTAACCGCGCAATACTTCGCACAAACCATGCTCGACGCAGGGCTACCAGCAGGAGTACTCAACGTAGTTGCAT CAGCAACTGCATCAGCCGTCTCAGATTCTCTCCTTGCAGACTCACGCCTGCGCAAACTCTCATTCACCGGCTCCACCCCC GTTGGCAAAGCCCTTCTAAAATCAGCCGCGCAAAATGTCCTACGCACCTCCATGGAGCTCGGCGGAAACGCCCCCTTCAT CGTCTTCGAAGACGCAAATATCGACGAAGCCGTTGAAGGCGCCATGGGAGCAAAAATGCGCAACATGGGCGAAGCCTGCA CCGCCGCAAACCGATTCCTAGTCCACGAATCCCGTGCCGAAGAATTTTCCACCAAACTAGCGACAAAAATCGCAAATCTC AAAACCGGCAACGGTCTAAACCCAGACACCACCTGTGGCCCCCTCATAGAACAAAAAGCAGTAGATTCCATCCACGAACT TGTACAAGATGCTCTCGACCGAGGTGCCCAAGCTCTGGTCGGCGGTTATCCCCAAAACGGTCCCGGATACTTCTACCAAC CCACAGTCCTCATCAACGTTCCTCACGATGCACGCGTCATCCAAGAAGAAATCTTTGGCCCTGTAGCACCCATCATCACC TTTTCTACCGAAGAAGAAGCAATCCAACTTGCCAACAACACAGAATACGGGCTAGCATCCTACGTCTACACAACAGATAC ATCCCGCGCCCTGCGAACACTAGACCGCCTAGAAGTCGGCATGACAGGCCTCAACATCGGCATCATGTCAAACGCCGCAG CCCCATTCGGAGGCGTTAAACACTCCGGACTAGGACGGGAAGGAGCCGCCGAAGGCATCGCCGAATACACCTACACACAA TACATCGGCATCAAAGACCCCTACGCCAGCTAA Protein sequence : MEQHLQELINKIPTGLLIGDTWREGSAGETFDVLNPATEEKLTALASATPEDAIAALDAACQVQDQWAHTPPRERAEILR RAYDLITDRSEEFATLMTLEMGKPLAESRGEVVYGAEFLRWFSEETVRDYGRYQPTPEGKNQILVKHKPVGPCLLITPWN FPLAMATRKAGAAIAAGCTMILKPARLTPLTAQYFAQTMLDAGLPAGVLNVVASATASAVSDSLLADSRLRKLSFTGSTP VGKALLKSAAQNVLRTSMELGGNAPFIVFEDANIDEAVEGAMGAKMRNMGEACTAANRFLVHESRAEEFSTKLATKIANL KTGNGLNPDTTCGPLIEQKAVDSIHELVQDALDRGAQALVGGYPQNGPGYFYQPTVLINVPHDARVIQEEIFGPVAPIIT FSTEEEAIQLANNTEYGLASYVYTTDTSRALRTLDRLEVGMTGLNIGIMSNAAAPFGGVKHSGLGREGAAEGIAEYTYTQ YIGIKDPYAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 6e-87 | 46 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 5e-95 | 46 |
