Gene Information

Name : HMPREF0733_11274 (HMPREF0733_11274)
Accession : YP_003984165.1
Strain : Rothia dentocariosa ATCC 17931
Genome accession: NC_014643
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.28
Position : 1392695 - 1393531 bp
Length : 837 bp
Strand : +
Note : COG: COG1120; Pfam: PF00005; InterPro: IPR003593

DNA sequence : 
ATGAAAACCGTAACTGAGCGTACTCTGCGCGTAGACAACGTGAGCCTAGGATACGGCGCACAGCCTATCGTCAAAGACCT
GAGCTTAGAATTCCCGCAGGGCAAGGTCACCGCCATTATCGGCCCCAACGGATGCGGTAAATCCACGCTTCTGCGGGGTG
TTTCGCGACTCTTGCATCCCCTTGACGGCGAGTTTTTGCTCGATGGTAAGCCTACGCATCAGTACTCCATGAAGGGGTTC
GCACGCATGGTCGGGCTTATGCCGCAGCATCCTATTGCGCCTGAAGGTATTACTGTTGCCGATTTGGTTTCGCGGGGACG
CTATCCCTATCAAGGGCTTTTCAAACGTAATAGTGCCGAAGATGATGAGGCGGTAGCCTGGGCCCTAGAGGCCACCGATA
CGATGTCGCTCGCCGAACGTCAGGTAACCGAGCTTTCCGGCGGGCAGCGCCAGCGCGTGTGGATTGCGATGGCGCTTGCG
CAGGAGACCGATATTCTGCTGTTGGATGAGCCGACCACCTACCTTGACCTGGCGCATCAGGTGGAGCTGCTGGATTTACT
AGCGGACCTGAACGAAGAACGCGGCACCACCATGATTATGGTGCTGCACGAGCTGAATCTCGCCGCTCGCGTTGCAGACT
ATCTGATCGCCATGAAGGACGGGCAGATCGTCAGTCGCGGATCTGCTCACGAGGTGCTGACCTCCAGAAATCTTAACGAT
ATTTTTGGGCTCAAGGCCGAGGTTGCTGATCCGTTTAGTGACGGGAGCGTGGTGGTGGTGCCGCTTCATCGGTCTGCGCA
CGCTTCGCAGAAGATACTGGACGACGTAAACCCCTGA

Protein sequence : 
MKTVTERTLRVDNVSLGYGAQPIVKDLSLEFPQGKVTAIIGPNGCGKSTLLRGVSRLLHPLDGEFLLDGKPTHQYSMKGF
ARMVGLMPQHPIAPEGITVADLVSRGRYPYQGLFKRNSAEDDEAVAWALEATDTMSLAERQVTELSGGQRQRVWIAMALA
QETDILLLDEPTTYLDLAHQVELLDLLADLNEERGTTMIMVLHELNLAARVADYLIAMKDGQIVSRGSAHEVLTSRNLND
IFGLKAEVADPFSDGSVVVVPLHRSAHASQKILDDVNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-56 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-59 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-59 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-48 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-48 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-50 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-50 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-50 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-50 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-46 45
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 5e-31 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 5e-31 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 6e-31 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 4e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0733_11274 YP_003984165.1 ABC transporter ATP-binding protein BAC0164 Protein 3e-48 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0733_11274 YP_003984165.1 ABC transporter ATP-binding protein VFG0925 Protein 3e-61 51
HMPREF0733_11274 YP_003984165.1 ABC transporter ATP-binding protein VFG1042 Protein 2e-48 48