Gene Information

Name : fepD (HMPREF0733_11128)
Accession : YP_003984019.1
Strain : Rothia dentocariosa ATCC 17931
Genome accession: NC_014643
Putative virulence/resistance : Virulence
Product : ferric siderophore ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 1218977 - 1219978 bp
Length : 1002 bp
Strand : -
Note : COG: COG0609; Pfam: PF01032; InterPro: IPR000522

DNA sequence :
ATGTTTTCCTTCGAGAAGGCACTCGACGGCTTTCTGCACCCGGATGCCGCCACAATCGAATCAAAACTGATTTGGTTCAA
GAGGATGCCCCGCACACTCGCCGCTATTATGGTGGGCGCGGCATTGGCGGTTGCGGGCGTTATCATGCAGGCGCTCTCAC
GCAACCCTCTCGCCGAACCGGGGCTGCTGGGCGTGAACTCCGGGGCGGCTGTTGCGGTCGTTGTGGGCGTTGGCATTTTC
GGGGTATCTTCCCCCTTCGTGCAGCTGTGGTTAGCGCTCGCTGGTTCCGGTTTCGCGGCGGGCACGGTATTCCTGCTGGG
CCTTATTGATTCCAAGCCAAACCTGGATTCTACTGCCCGCCTTGTGCTTACAGGCGTTGCGGTGAATGCCTGTTTGGGAA
CGCTCACCGGTATTATTACTATGTTCAATTCCCGGGCTTTCGACTCACACCGGTTCTGGGTGGTCGGTTCCCTAGAAAAC
CGCACCTACGAGCAGGTTTTTACGGCGCTTCCCCTCGTGGTGTTGGGGCTGGTTCTATCGTTCATTCTGATCGGCCCCCT
GCGTGCTCTAGCGCTAGGTGAGGATGCGGCATCCGGCTTGGGCGTGCCGGTCACCCTCGTGCGCGGTGCCTGTATCGTGG
CGATTATGGCTCTATGCGGCGCGGCGACTGCGGTAGCCGGACCCACCGGATTTGTGGGGTTGGTGGTTCCGCATGCGGTG
CGCTTGCTGGTGGGTACCGATATTGCGCGGGTTTTGCCACTTTCGCTCGTCTACGGACCGGTGCTGGTTCTGACCGCCGA
TATTGCCGGGCGCATGATCGTTCCGCCCGGGGAACTTGAGGTCGGTATCGTGACCGCGTTCATCGGCGCGCCCGTGCTCA
TGGTCCTGGTACTTCGGCTTAGTTCCGGGGCGAAAGGTAGCAAGCGCAGCATCCTGGGTGTGAAGGCGGCACAGCACGAA
CAGGCAGGGGCGGCTCCGCAAACTGCGGGAGGTTCCCGGTGA

Protein sequence :
MFSFEKALDGFLHPDAATIESKLIWFKRMPRTLAAIMVGAALAVAGVIMQALSRNPLAEPGLLGVNSGAAVAVVVGVGIF
GVSSPFVQLWLALAGSGFAAGTVFLLGLIDSKPNLDSTARLVLTGVAVNACLGTLTGIITMFNSRAFDSHRFWVVGSLEN
RTYEQVFTALPLVVLGLVLSFILIGPLRALALGEDAASGLGVPVTLVRGACIVAIMALCGAATAVAGPTGFVGLVVPHAV
RLLVGTDIARVLPLSLVYGPVLVLTADIAGRMIVPPGELEVGIVTAFIGAPVLMVLVLRLSSGAKGSKRSILGVKAAQHE
QAGAAPQTAGGSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 4e-23 42
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 4e-23 42
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 4e-23 42
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 4e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepD YP_003984019.1 ferric siderophore ABC transporter permease VFG0926 Protein 2e-26 46