Gene Information

Name : vipA (AXYL_05616)
Accession : YP_003981630.1
Strain : Achromobacter xylosoxidans A8
Genome accession: NC_014640
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein VipA/TviB
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : 1.1.1.-
Position : 6015926 - 6017203 bp
Length : 1278 bp
Strand : -
Note : -

DNA sequence : 
ATGTTGCGAATTCAAGATGTGAAACTCGCTGTTGTCGGCCTGGGCTATGTCGGCCTGCCCCTGGCGGTGGAGTTCGGCAA
GAAGCGTTCGGTCATCGGATTCGATATCAATACGCGCCGCATCGACGCGCTCAAGGCGGGTCATGATCACACACTGGAAG
TCAGCGACGAAGAACTGAAGGAAGCTACCCAGCTGAGCTACACGGCCGACCGCGCCGTGCTGGGGCAGGCCAACGTTTAC
ATCGTGACTGTTCCGACGCCTATCGACGAATACAAGCAACCGGACTTGACCCCGCTGGTAAAGGCCAGCGAAACCATCGG
CGCGGTCCTCAAGCGCGGCGACATCGTCATCTATGAGTCCACGGTCTACCCGGGCGCCACGGAAGAAGACTGCGTGCCGG
TGCTGGAGCGCGTGTCGGGCCTGAAGTTCAACGTGGACTTCTATGCCGGCTACAGCCCAGAGCGCATCAATCCGGGCGAC
AAGGCGCATCGCGTCAGCACCATTAAAAAAGTCACCTCTGGCTCCACGCCCGAAGTCGCCGAACTGGTTGACCAGCTGTA
TCAGCAGATCATTGTCGCCGGCACGCACAAGGCGTCCAGCATCCGCGTGGCCGAGGCTGCCAAGGTGATCGAGAACACGC
AGCGCGACGTGAACATCGCGCTGATCAATGAGCTCGCCCTGATCTTCAACAAGATGGGCATCGATACCGAGGCTGTGCTG
CAGGCGGCGGGCACCAAGTGGAACTTCCTGCCGTTCCGTCCGGGCTTGGTGGGCGGCCACTGCATTGGCGTGGATCCGTA
CTACCTGACTCACAAGGCGCAATCCATCGGCTATCACCCGGAGATCATCCTGGCTGGCCGCCGCCTGAACGACTCCATGG
GCGGATATGTGGTGTCGCAGCTGGTCAAGGCCATGACCAAGCGCCGCATCCACGTGCAGGGCGCCCGCGTGCTGGTCATG
GGCCTGGCATTCAAGGAAAACTGCCCGGACCTGCGCAATACGCGCATTGTCGACATCGTGAAGGAACTGGGCGATTACAA
CGTGGCGGTTGACGTATACGATCCATGGGTCGATCCGGAAGAGGCCGTACACGAATATGGCATCACGCCGGTGGCCAACC
TCGAAGAGGGCAAGTACGACGCTGTCATCCTCGGCGTGGCGCATCATCAATTCACCGAAATGGGCGCGACCGGCATCCGC
AAGCTGGGCAAGCCGGAGCATATCCTCTATGACCTGAAGTACGTGCTGTCGCCCGATGAATCGGATCTGCGTCTGTAA

Protein sequence : 
MLRIQDVKLAVVGLGYVGLPLAVEFGKKRSVIGFDINTRRIDALKAGHDHTLEVSDEELKEATQLSYTADRAVLGQANVY
IVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNVDFYAGYSPERINPGD
KAHRVSTIKKVTSGSTPEVAELVDQLYQQIIVAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVL
QAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEIILAGRRLNDSMGGYVVSQLVKAMTKRRIHVQGARVLVM
GLAFKENCPDLRNTRIVDIVKELGDYNVAVDVYDPWVDPEEAVHEYGITPVANLEEGKYDAVILGVAHHQFTEMGATGIR
KLGKPEHILYDLKYVLSPDESDLRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-150 68
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-150 68
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-111 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vipA YP_003981630.1 Vi polysaccharide biosynthesis protein VipA/TviB VFG0431 Protein 1e-150 68