Gene Information

Name : radC1 (AXYL_01108)
Accession : YP_003977167.1
Strain : Achromobacter xylosoxidans A8
Genome accession: NC_014640
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC 1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1178281 - 1178775 bp
Length : 495 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTTTCGTCGTCAATGACTCCTACCTGGAGTCGCTTTCCGCCATCGCTACCCAACACGAGGACTGGATCATCCAGCA
AGCCATCGTGCTGCTGGAGAGACGGATCTTCAAAGCTGGACCGTGCCTCAGCCGACCGGCCGCTGTGCGGGACTACCTGC
GTCTGAAACTGGTCGCTGAGCCCAATGAGATATTCGCCGCTGTGTTCCTGGACAGCATGCACCAGGTGCTGGCCTACGAG
CCGTTGTTCAGGGGCACGATCAACTCGACATCGGTCTATCCGCGTGTCGTCGCGCAGCGTGTGCTGGAGTTGAATGCCGC
CGCGGTGGTCTTCAGCCACCAGCACCCCTCGGGCATCTCCGAACCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGTCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Protein sequence : 
MSFVVNDSYLESLSAIATQHEDWIIQQAIVLLERRIFKAGPCLSRPAAVRDYLRLKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVAQRVLELNAAAVVFSHQHPSGISEPSSADRMLTQQLQVALALIDVRVLDHIIVGQGAPFSFAE
SGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-66 91
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 8e-39 60
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-29 48
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-29 48
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 48
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 3e-23 48
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-23 47
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-23 47
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-27 47
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-24 46
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-23 46
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-23 46
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-23 46
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 4e-22 45
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 5e-23 45
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-23 45
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 8e-24 45
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-23 45
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-23 45
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-23 45
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-23 45
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-23 45
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 3e-23 45
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 3e-23 45
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-23 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG1119 Protein 5e-30 48
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG1617 Protein 1e-23 48
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG1678 Protein 7e-25 46
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG0660 Protein 5e-24 46
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG1528 Protein 1e-23 45
radC1 YP_003977167.1 DNA repair protein RadC 1 VFG1066 Protein 1e-23 45