Gene Information

Name : BATR1942_04605 (BATR1942_04605)
Accession : YP_003972806.1
Strain : Bacillus atrophaeus 1942
Genome accession: NC_014639
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 896011 - 898113 bp
Length : 2103 bp
Strand : -
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
ATGCGTTGTCAACACTGTCAGAAAAACGAGGCGACGATTCGCCTTAACATGCAGATCAATTCCGTTCAAAAACAATTGGT
TTTATGTGAAACTTGTTATACAGAATTAACCCGTAAACCATCTATGAGCATGGGACCGCAATCTTTCGGCTTTCCATTTG
AACAAGGTTTCTTTCAACAAAAAGATCAAGCCGCACAACAATCCGGCGGGAAAAAAGGATTGCTTGATGAACTGGCCCAA
AATGTCACAAACGGTGCGAAAGCGGGACTCATTGACCCTGTAATCGGACGCGATGATGAAGTGGCGCGGGTGATTGAAAT
ATTAAACCGCCGAAATAAAAATAATCCGGTTCTCATCGGGGAACCCGGTGTAGGTAAAACGGCGATTGCTGAAGGGCTCG
CTCTCAAAATCGCAGAAGGCGATGTTCCGAATAAATTAAAAAACAAAGAGCTATATTTGCTTGATGTTGCCTCGCTTGTC
GCCAATACCGGTATCAGAGGGCAATTTGAAGAAAGAATGAAACAGCTGATCACCGAACTGAAAGAGCGTAAAAATGTTAT
TCTTTTCATTGATGAAATCCATCTTCTCGTCGGTGCAGGCTCTGCCGAAGGATCAATGGATGCCGGCAATATATTGAAAC
CGGCTCTTGCCAGAGGCGAGCTGCAAGTCATCGGAGCAACGACATTAAAAGAGTACCGTCAAATAGAAAAAGATGCAGCG
CTGGAAAGACGTTTTCAGCCTGTTATGGTGCAGGAGCCTTCCATTGATCAGGCGATCAGCATCCTAAAAGGTATTAAAGA
TAAATATGAAGCATATCACGGCGTCACATTCAGTGATGAAGCGATCAAAGCTTGTGTCACTTTATCGTCCCGCTATATTC
AGGACCGCCATCTGCCGGATAAAGCCATTGACCTGTTAGACGAAGCCGGATCAAAGGCAAATCTTCTAATTGATGAGATG
AATCACGAGGATGCAGCTGCACGGCTGACTGCTATCGAGGCAGAGAAAGCAAAAGCGCTTGAAGAAGAAAACTACGAACA
GGCTGCAAAGCTTCGCGACGAAGAAGAGGCACTTGAGGAAAAACTCAAAACATCGTCTGCCCGTTCAGCTATTACAGTGA
ACGCTGAGCACATTCAAGACATCGTAGAACAAAAAACAGGCATTCCAGTCGGAAAACTGCAATCAGATGAACAAACAAAA
ATGAAAGAACTTGAAGCAAAACTCCATGAACGTGTCATCGGACAGGAAGCGGCCGTTCAAAAAGTGGCAAAAGCGGTAAG
AAGAAGCCGCGCCGGACTGAAGTCAAAAAACAGACCTGTTGGAACGTTTCTCTTTGTAGGCCCGACAGGCGTAGGGAAAA
CCGAGCTTTCTAAAACACTTGCAGATGAGTTATTCGGTACGAAAGACTCCATTATCCGTCTCGATATGAGTGAGTATATG
GAAAAACACGCTGTATCTAAAATCATCGGTTCACCGCCAGGATACGTAGGACATGATGAAGCCGGTCAATTAACTGAAAA
AGTGCGCCGCAATCCATACAGCATCGTTTTGCTGGACGAGATCGAAAAGGCTCATCCGGACGTACAGCATATGTTCCTGC
AAATCATGGAAGACGGACGCTTAACCGACAGCCAAGGCAGAACAGTGAGCTTTAAAGACACCGTCATTATTATGACAAGC
AATGCGGGAACTGGCGAAAAACAGGTAAAAGTCGGTTTTCAATCAGAAGAATCGGCCATTAAAGAACAAACACTGATTGA
TTCACTCAGCATGTTTTTCAAACCTGAATTTTTAAACCGTTTCGACAGCATTATCGAATTCCATGCTCTCCAAAAAGAGC
ATCTGGTCAAAATCGTCACTCTGCTTTTAAGCGAGCTTGAAGAAACATTGGCAGAACGCGAAATCGACTTACACGTCACA
AATGAAGCAAAAGAAAAAATTGCGGAGCTTGGCTACCATCCTGCATTCGGCGCGCGTCCGCTCAGAAGAACCATTCAAGA
ATCGATTGAGGATGAAATGACAGATCTGCTGCTGGAAGATTCTCATATTAAAGGTTTTAACGTGATTGTGGAAGATAACA
GCATTAAAGTACAAGCAAAATAA

Protein sequence :
MRCQHCQKNEATIRLNMQINSVQKQLVLCETCYTELTRKPSMSMGPQSFGFPFEQGFFQQKDQAAQQSGGKKGLLDELAQ
NVTNGAKAGLIDPVIGRDDEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLV
ANTGIRGQFEERMKQLITELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAA
LERRFQPVMVQEPSIDQAISILKGIKDKYEAYHGVTFSDEAIKACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLLIDEM
NHEDAAARLTAIEAEKAKALEEENYEQAAKLRDEEEALEEKLKTSSARSAITVNAEHIQDIVEQKTGIPVGKLQSDEQTK
MKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGTFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYM
EKHAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTS
NAGTGEKQVKVGFQSEESAIKEQTLIDSLSMFFKPEFLNRFDSIIEFHALQKEHLVKIVTLLLSELEETLAEREIDLHVT
NEAKEKIAELGYHPAFGARPLRRTIQESIEDEMTDLLLEDSHIKGFNVIVEDNSIKVQAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 7e-145 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BATR1942_04605 YP_003972806.1 ATP-dependent Clp protease VFG0080 Protein 0.0 62
BATR1942_04605 YP_003972806.1 ATP-dependent Clp protease VFG0079 Protein 7e-151 53