Gene Information

Name : BATR1942_18295 (BATR1942_18295)
Accession : YP_003975507.1
Strain : Bacillus atrophaeus 1942
Genome accession: NC_014639
Putative virulence/resistance : Virulence
Product : YycF protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3571067 - 3571777 bp
Length : 711 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGATGGATAAAAAGATCCTTGTAGTGGATGATGAAAAACCGATTGCAGATATATTAGAGTTTAATTTAAGAAAAGAGGG
CTATGAAGTACATTGTGCCTATGACGGAAATGAAGCCGTCGAAATGGTCGAAGAAATTCAGCCTGATTTGATTCTTTTAG
ATATTATGCTTCCGAATAAAGACGGCGTAGAAGTATGCCGGGAAGTGAGAAAGAAATATGACATGCCGATCATTATGCTG
ACGGCAAAGGATTCCGAAATTGACAAGGTCATCGGGCTAGAACTCGGGGCTGATGATTATGTGACAAAGCCGTTCAGCAC
ACGTGAACTTTTGGCGCGGGTAAAAGCGAATCTGCGACGTCAGCTGACGACTGCACCGGCAGAGGAAGAATCCTCTTCCA
ATGATATTCACATCGGTTCTCTGGTGATTTTCCCTGATGCATATGTGGTGTCAAAAAGAGAAGAAACGATTGAATTGACT
CACCGTGAGTTTGAACTGCTGCACTACTTAGCGAAGCACATCGGTCAAGTGATGACCCGTGAGCATTTGCTTCAAACGGT
TTGGGGCTACGATTACTTTGGCGATGTCAGAACGGTTGATGTGACAGTCCGGCGTCTTCGAGAAAAAATTGAGGATAACC
CAAGCCATCCTAATTGGATCGTGACAAGACGAGGCGTGGGTTATTACTTAAGAAACCCAGAACAGGACTAA

Protein sequence : 
MMDKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML
TAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELT
HREFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-31 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BATR1942_18295 YP_003975507.1 YycF protein NC_012469.1.7685629. Protein 7e-66 68
BATR1942_18295 YP_003975507.1 YycF protein NC_007793.3914279.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_002758.1121668.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_007622.3794472.p0 Protein 1e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_009641.5332272.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_013450.8614421.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_002951.3237708.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_003923.1003749.p0 Protein 1e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_002745.1124361.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_009782.5559369.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein NC_002952.2859905.p0 Protein 2e-53 56
BATR1942_18295 YP_003975507.1 YycF protein HE999704.1.gene2815. Protein 5e-48 54
BATR1942_18295 YP_003975507.1 YycF protein AE016830.1.gene1681. Protein 2e-45 49
BATR1942_18295 YP_003975507.1 YycF protein NC_012469.1.7686381. Protein 6e-44 49
BATR1942_18295 YP_003975507.1 YycF protein FJ349556.1.orf0.gene Protein 2e-39 46
BATR1942_18295 YP_003975507.1 YycF protein HE999704.1.gene1528. Protein 5e-32 45
BATR1942_18295 YP_003975507.1 YycF protein AM180355.1.gene1830. Protein 1e-38 45
BATR1942_18295 YP_003975507.1 YycF protein AF155139.2.orf0.gene Protein 3e-36 44
BATR1942_18295 YP_003975507.1 YycF protein AE000516.2.gene3505. Protein 2e-36 44
BATR1942_18295 YP_003975507.1 YycF protein NC_005054.2598277.p0 Protein 1e-37 43
BATR1942_18295 YP_003975507.1 YycF protein NC_014475.1.orf0.gen Protein 1e-37 43
BATR1942_18295 YP_003975507.1 YycF protein NC_010079.5776364.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_002952.2859858.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_007622.3794948.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_003923.1003417.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_013450.8614146.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_002951.3238224.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_007793.3914065.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein NC_002758.1121390.p0 Protein 3e-34 43
BATR1942_18295 YP_003975507.1 YycF protein AF162694.1.orf4.gene Protein 1e-33 42
BATR1942_18295 YP_003975507.1 YycF protein AF130997.1.orf0.gene Protein 2e-36 42
BATR1942_18295 YP_003975507.1 YycF protein DQ212986.1.gene4.p01 Protein 7e-37 42
BATR1942_18295 YP_003975507.1 YycF protein CP001918.1.gene5135. Protein 2e-27 42
BATR1942_18295 YP_003975507.1 YycF protein CP004022.1.gene3215. Protein 3e-35 42
BATR1942_18295 YP_003975507.1 YycF protein AE015929.1.gene1106. Protein 1e-29 42
BATR1942_18295 YP_003975507.1 YycF protein NC_002695.1.915041.p Protein 2e-31 41
BATR1942_18295 YP_003975507.1 YycF protein CP000034.1.gene3834. Protein 2e-31 41
BATR1942_18295 YP_003975507.1 YycF protein BAC0596 Protein 1e-27 41
BATR1942_18295 YP_003975507.1 YycF protein CP000034.1.gene2186. Protein 5e-29 41
BATR1942_18295 YP_003975507.1 YycF protein NC_002695.1.916589.p Protein 4e-29 41
BATR1942_18295 YP_003975507.1 YycF protein CP001138.1.gene2239. Protein 1e-27 41
BATR1942_18295 YP_003975507.1 YycF protein CP001918.1.gene3444. Protein 2e-28 41
BATR1942_18295 YP_003975507.1 YycF protein BAC0039 Protein 5e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BATR1942_18295 YP_003975507.1 YycF protein VFG1389 Protein 7e-29 45
BATR1942_18295 YP_003975507.1 YycF protein VFG1390 Protein 5e-35 42
BATR1942_18295 YP_003975507.1 YycF protein VFG1563 Protein 1e-31 42
BATR1942_18295 YP_003975507.1 YycF protein VFG1702 Protein 7e-32 41