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Name : clpC (BBPR_0658) Accession : YP_003970789.1 Strain : Bifidobacterium bifidum PRL2010 Genome accession: NC_014638 Putative virulence/resistance : Virulence Product : genetic competence regulator ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 817821 - 820397 bp Length : 2577 bp Strand : + Note : - DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGCGCACTCTCCAGCACAACTA CATCGGCACCGAACACCTGCTGCTCGGCCTGATCCGCGAAGGTGAGGGGGTCGCCGCCAAGGCGCTCGCATCCAAGGGAG TGACCTTGGACGACACCCGCAAGCAGGTCGAGGAGATGATCGGCAAAGGCAATGCCGCCCCCAACGGGCACATTCCCTTT ACTCCGCACGCCAAGCAGGTGTTGGAGCTGAGTCTGCGCGAGGCGCTGCAACTCGGTCACAGCTATATCGGCACCGAGCA CATCCTGCTCGGCCTGATCCGCGAAGGCGAGGGCGTGGGCACCCAGGTGCTCATCAAGATGGATGTCGACCTGGGCGAAC TGCGTTCGGCCACTATCGACATGATCCATGGCAACAGCGGCGGCGCCAATGCCTCCGGCAAGGGCGATCTGGCCAACGCC GGCGGCGTGCAGGACAAGCGCAGCCAGACCGGTTCGGCCATTCTGGACCAGTTCGGGCGCAACCTGACCGCCGAAGCGGC CGAGGGCAAGCTCGACCCGGTGATCGGGCGCACCAACGAGATCGAACGTGTCATGGTCGTGCTGTCGCGCCGCACGAAGA ACAACCCCGTGCTGATCGGCGAGCCGGGCGTCGGCAAGACCGCCGTCGTCGAAGGCCTCGCGCAGAAGATCAACGCCGGC GACGTGCCGGAGACGCTGAAGGACAAGCAGGTCTATTCGCTGGATCTGGGCTCCATGGTGGCCGGCTCGCGCTACCGCGG CGATTTCGAGGAACGCCTCAAGAAGGTGCTCAAGGAGATCAAGACGCGCGGCGACATCGTGCTGTTCATCGACGAGATTC ACACGATCGTCGGTGCCGGTTCGGCGGACGGCGCCTTGGGCGCGTCTGACATGCTCAAGCCCATGCTGGCTCGCGGTGAG CTCCAGACCATCGGCGCCACCACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCGCTGGAACGTCGTTTCCA GCCGATTCAGGTGCATGAGCCGACAATCGCGGAGACCATCGAAATCCTCAAGGGCCTGCGCTCGCGCTACGAGAACCACC ACCACGTGACCATCACCGACGGCGCGCTGCAGTCCGCCGCGGAGCTGTCGTCCCGCTACATCCAGGACCGCAACCTGCCC GACAAGGCCATCGACCTGATCGACGAGGCCGGCGCGCGGCTGCGCATTAAGCGCCTGACCGCCCCGCCCGAGCTCAAGGA ACTTGACCAGAAGGTCGCGAAGGTCGCCGCCGAGAAGGACAAGGCCATCAAGGACCAGGACTTCGAGAAGGCCGCCGAGC TGCGCGACAACCAGGAGAAGCTGGAAGCGGAGCGCAAGGAGAAGGAATCCTCCTGGCGCGAGGGCGAGTCCGATGTCGAG ATGGTCGTGAACGAGGATGTGATCGCCCAGGTGATCTCCTCGACCACCGGCATTCCGGTGTTCAAGCTCACCCAGGCCGA GTCGAAGAAGCTGCTCGGCATGGAGTCCGAGCTGCACAAGCGCATCATCGGCCAGGACGAAGCGGTTTCCGCGCTGTCCC GTTCGATTCGCCGCACTCGTGTGGGCCTCAAGGATCCGAAGCGTCCTGCGGGCTCGTTCATCTTCGCCGGCCCGACCGGC GTCGGCAAGACCGAGCTGGCCAAGGCGCTGGCCGAGTTCCTGTTCGACGATGAGGACGCGCTGATTCGCGTGGACATGTC GGAGTTCTCCGAGAAGTATGCGGCATCGCGTCTGTTCGGCGCTCCTCCGGGATACGTCGGTTACGAGGAGGGTGGCGAGC TCACCGAGAAGGTGCGCCGCAAGCCGTTCTCCGTCGTGCTGTTCGACGAGATCGAGAAGGCCCATCCGGACATCTTCAAC ACGCTGCTGCAGGTGCTGGACGACGGTCACCTGACCGATGGTCAGGGACGCAAGGTGGACTTCAAAAACACCATCATCAT CCTGACCACCAACCTGGGTACGCGCGACATCGCCAAGGCCGCCAACACCGGCTTCAACCTTGGCTCGAACGCGGAGTCCA GCTACCAGCGCATGAAGGATCAGGTCAGCTCCGAACTCAAGCAGCAGTTCCGTCCCGAGTTCCTGAACCGTCTTGACGAC ATCATCGTGTTCCGTCAGCTCACCGAGCCGCAGGTGCGTCAGATTGTCGACCTCGACATCAAGCAGCTCAACGACCGTCT GTTCGACCGTCACATGTCGCTGGAGCTCACCCCGGCCGCCAAGGACCTGCTCGCGCAGAAGGGCTTCGACCCGCTGCTCG GTGCTCGTCCGCTGCGCCGCGTGATCCAGCGCGACATCGAGGACGCCATCTCGGAGAAGATCCTGATGGGCGAACTCGAA GACGGTCAGCGCGTGGTGGTCGACTCCGAAGGCGAGGGCATCCTCGGCGAATTCACCTTCCGCGGCGAACAGTTCGACGA CGCCAAGCCCGAGAACGAGCCGGCTGCGGAGCCGGCAACGGAGGAGTCAGCTGACAAGTCGGCTGACAACGCCGCTCCCG CCTCGCAGGAGGCCTGA Protein sequence : MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVTLDDTRKQVEEMIGKGNAAPNGHIPF TPHAKQVLELSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIHGNSGGANASGKGDLANA GGVQDKRSQTGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKINAG DVPETLKDKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGE LQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLP DKAIDLIDEAGARLRIKRLTAPPELKELDQKVAKVAAEKDKAIKDQDFEKAAELRDNQEKLEAERKEKESSWREGESDVE MVVNEDVIAQVISSTTGIPVFKLTQAESKKLLGMESELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPAGSFIFAGPTG VGKTELAKALAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFN TLLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGSNAESSYQRMKDQVSSELKQQFRPEFLNRLDD IIVFRQLTEPQVRQIVDLDIKQLNDRLFDRHMSLELTPAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGELE DGQRVVVDSEGEGILGEFTFRGEQFDDAKPENEPAAEPATEESADKSADNAAPASQEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003970789.1 | genetic competence regulator ClpC | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_003970789.1 | genetic competence regulator ClpC | VFG0080 | Protein | 2e-136 | 50 |
