Gene Information

Name : Ilyop_1055 (Ilyop_1055)
Accession : YP_003967184.1
Strain : Ilyobacter polytropus DSM 2926
Genome accession: NC_014632
Putative virulence/resistance : Virulence
Product : N-6 DNA methylase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG0286
EC number : -
Position : 1146614 - 1149604 bp
Length : 2991 bp
Strand : -
Note : COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR002052:IPR003356; KEGG: ter:Tery_4473 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: A9DR80 Restriction/modification methyltransferase; PFAM: N-6 DNA

DNA sequence :
ATGGCTAAAAGACCAGCTTACTATATAGATTTTGTAAATAATCGGATAAAGGAAAAAATGGTTGAATTCAAATGGTATCC
TGGATATAGCATAGGGCAAAAACAAAAAAGTATTATTAGTTTACATGAAAATTTTTTATTAGAATTTCCTAACGCTAACA
TTTTAGAAATCTCTTCAAAATCATTAGAGAACTTAGGGATTAAATTAAGTGCTTTTAATTTAATGATTCAAACAAAAAAA
GGTAAAGCATTTTCTGTAGAATGTGCATTCCAAGGAAGCAAAGTTTTTAAAAAAGGTGGACCATACATTGATTTATTTCA
TAAAACTTCTAGAGAAGCTAAAAAAGATCCTAGGATAAAGAATAGTGGCCCACTTGTTAAATTTGAATACAATAAAAATG
AATGGAGTTTAGAACCTAAAACTTTTTTTTATGACTGGCTTTATATAAATTCACTATATAGAAATAAAGAATTAGCTCAA
GAAATTATAAAATATGATTCATTTACAGATATCGAATTTAATCCTGAAAAGTCAATAAATTGTCAAGCTAGAGCGGCAGC
ATTATTCGTTCTTTTAAAAAAATTAAACATTATAGATAATGCTATGAAGAGTATTAATGAATATAAAAAAAGTGTAGCGC
CTTTTTATGAATTAAATAGAGATAATTTCAGCAAAAACTTTGAAAAAGAAAATAAAAATAAACAGTTATCTTTGTCTCAA
GTAAGTTTAAAAAGTGAACCAAAGATAAACAATAAGGAGATAATAAGAATGGATCATAAAGTTCATAATAAAATAGTAAG
TTATATTTGGTCAATAGCAGATGATGTTTTAAGAGATATTTTTGTAAGAGGTAAATATAGAGATGTTATTTTGCCATTCA
CTGTTTTAAGAAGAATAGATATATTATTAGAAGAATCAAAAGAAAAAGTATTGGAAATGAATAAATTTTTTGAAGAAAAT
AATATAAATGATAAATCAGGACTCGAAAAAATTACAGGATACCCTTTTTATAATACTTCGCCATTTACAATGGGTAAAAA
TAGTTTAAAGGATTCAGAATATCCTTTTGTTTCTTTACTATCTGATCCAGACAAAATAGACAGTAATCTAGAAGAATACT
TGGATGGATTTAGTCCTAATATCCAAGAAATTATAAGTAAGTTTAAAGTTCGTAATCAGCTCGAAACAATGCAAGATGCT
GGGATTACTTTTGGTTTAATTGATAAACTTACTTCAGGAAGTATAAATTTAAGTCCTTATGAAGTAAAAAATTCTAAAGG
TGAAATTTTACCTGCACTTACTAACTTAGGAATGGGGTATGTATTTGAAGAATTAATCAGAAAATTTAATGAAGAGAATA
ATGAAGAAGCTGGAGAGCATTTTACCCCTAGAGAAATAATAAAATTAATGACACACATAATTTTTGAACCAATCAAAGAC
ATATTAAAAGAGCGTGAAGGAGCAAGATTTTCAATATATGATCCTGCATGTGGTAGTGGTGGTATGCTCACGGAAGCAGA
AGATTTTGCATTAAAAATTACAGATAATAAATGTATTTTTTCACTATTTGGACAAGAAGTTAATCCAGAGACCTGGGCAA
TATGTACAGGAGATATGCTAATAAAAGGAGAAAAAGCATCAAATATAGGTTATGGCTCAACCTTATCAAATGATGAGTTT
AAAGGGCATAAATTTGACTTTATTCTATCTAACCCACCATACGGTAAAAGTTGGAAAAATGATGTAGATGCTATTGTTGA
GAATAGAGGAAAAAAAGGAAAAGAAATTATTAAAGATCCACGTTTTAAAGTTGGTCTTCCAACTATATCTGATGGTCAAT
TATTATTTTTAGTAAATATGATTTCGAAAATGAAAAATGATACAGAGCTTGGAAGTAGGATAGCTTCTGTTCATAATGGT
TCTTCTTTATTTACAGGAGATGCCGGTCAAGGTGAAAGTGAAATAAGGAAAATGATATTAGAAAATGACCTGCTTGAATG
CATAATAGCACTGTCTACAAATATATTCTATAACACGGGTATTCCAACATATATTTGGATACTTTCTAACAGAAAAGAGG
AGAGAAGAAAGGGAAAGGTTCAGCTTATAAATGCAATTGATATTTACACACCATTGAGAAAAAATCTTGGTCAAAAAAAT
TGTGAACTTACTAAAACTCAGATAGATAGTATTACTAAAATATATCTGGATTTTAAAAAAACAGAGACTTCAAAAATATT
TGACAATGAAGACTTTGGATACAATAAAATAATTGTTGAAAGACCTTTGAGATTAAAAGCCAAAATAACCAATGAAGCGA
TAGAAAGTCTTCGATATGAAAAAACAATCATTGATGAAGCAAAATGGATTTATAGAAAATATGGTGATAAAGTCTATGAT
GGTTTAAAAGATGTTAAAAAAGATATAGAAAATTGGATTGAAAAAAATGAAATAAAAATATCCCCTGCAAACAAAAAGAA
AATTTTTGATGTAAATGTTTGGAAATCTCAAGAGGAGCTTATGAAAATAACAGAGCAACTTTTAGAAGAAATTGGTGAAA
TAGAGTTTGATAATTTTAATACTTTTAAAGATTTGATTGGTGATACATTAAACAAATTGGATATAAAAATTGGTAAAAAA
GACCTCGATTTAATTTTTAATGCGATAACCTGGAAAGATGAAGAGGGAGAGCCTGTCATAAAAAAAGTAGAGAAAGATGG
GACTATTATTTACGAAGCTGACAGCGATCTAAGAGACAGTGAAAGTGTTCCATTAAATGAAGATATCCATGAATATTTTG
AAAGAGAAGTTTTAAATTATATTCCCGATGCTTGGATAGATGAAAGTAAAACACAAAAAGGATACAGCATTTCATTCACA
AGATATTTTTATAATTTTACTCCTCCTAGAAGTCTTGAGGCGATTGCGAGTGAAATAGAAAAACTTCAAGAAGAAACCGA
AGGAATTATGGAGGAATTTTTAAATGATTAA

Protein sequence :
MAKRPAYYIDFVNNRIKEKMVEFKWYPGYSIGQKQKSIISLHENFLLEFPNANILEISSKSLENLGIKLSAFNLMIQTKK
GKAFSVECAFQGSKVFKKGGPYIDLFHKTSREAKKDPRIKNSGPLVKFEYNKNEWSLEPKTFFYDWLYINSLYRNKELAQ
EIIKYDSFTDIEFNPEKSINCQARAAALFVLLKKLNIIDNAMKSINEYKKSVAPFYELNRDNFSKNFEKENKNKQLSLSQ
VSLKSEPKINNKEIIRMDHKVHNKIVSYIWSIADDVLRDIFVRGKYRDVILPFTVLRRIDILLEESKEKVLEMNKFFEEN
NINDKSGLEKITGYPFYNTSPFTMGKNSLKDSEYPFVSLLSDPDKIDSNLEEYLDGFSPNIQEIISKFKVRNQLETMQDA
GITFGLIDKLTSGSINLSPYEVKNSKGEILPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIKLMTHIIFEPIKD
ILKEREGARFSIYDPACGSGGMLTEAEDFALKITDNKCIFSLFGQEVNPETWAICTGDMLIKGEKASNIGYGSTLSNDEF
KGHKFDFILSNPPYGKSWKNDVDAIVENRGKKGKEIIKDPRFKVGLPTISDGQLLFLVNMISKMKNDTELGSRIASVHNG
SSLFTGDAGQGESEIRKMILENDLLECIIALSTNIFYNTGIPTYIWILSNRKEERRKGKVQLINAIDIYTPLRKNLGQKN
CELTKTQIDSITKIYLDFKKTETSKIFDNEDFGYNKIIVERPLRLKAKITNEAIESLRYEKTIIDEAKWIYRKYGDKVYD
GLKDVKKDIENWIEKNEIKISPANKKKIFDVNVWKSQEELMKITEQLLEEIGEIEFDNFNTFKDLIGDTLNKLDIKIGKK
DLDLIFNAITWKDEEGEPVIKKVEKDGTIIYEADSDLRDSESVPLNEDIHEYFEREVLNYIPDAWIDESKTQKGYSISFT
RYFYNFTPPRSLEAIASEIEKLQEETEGIMEEFLND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 2e-154 46
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 2e-154 46
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 7e-154 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ilyop_1055 YP_003967184.1 N-6 DNA methylase VFG1102 Protein 1e-154 46