Gene Information

Name : EIO_2655 (EIO_2655)
Accession : YP_003965032.1
Strain : Ketogulonicigenium vulgare Y25
Genome accession: NC_014625
Putative virulence/resistance : Virulence
Product : Mn+2/Fe+2 ABC transporter inner membrane protein SitC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2561619 - 2562482 bp
Length : 864 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGTGCTATTTGAGCCGTTCACCTACAGCTATATGATGAACGCCATGTGGGTCTCCGCGCTGGTCGGCGCGGTTTG
CGCATTCCTGTCGGCCTATCTGATGCTGAAGGGCTGGTCGTTGATCGGCGATGCATTGTCCCATGCGGTCGTGCCGGGGG
TGGCGGGGGCCTATATGCTGGGGCTGCCCTTTGCGCTGGGCGCGTTTTTCGCGGGCGGCCTTGCTGCGGCGGCGATGCTG
TTCCTGTCGGATCGCACGGGCCTAAAGGTTGATGTTGTGATCGGGCTGATCTTTACCTCCTTCTTTGGTCTTGGGCTGTT
CATGGTCTCGATCAATCCGATGTCGGTCTCGGTTCAGACGATTACCATGGGCAATATCCTTGCCATCACGCCCGAAGATA
CGCTGCAACTGGCGATCATCGGCGTTGTCTCGCTGGCGATTCTGCTGCTGAAATGGAAGGATCTGATGGTCGTGTTCTTT
GACGAGAACCACGCCCGCTCTATCGGTCTGCGTCCCAATGTGCTGAAAGCGGTGTTCTTTGTGCTGCTGGCGGCCTGTGT
GGTGGCCGCAATGCAGACGGTTGGCGCGTTTTTGGTGATTGCGATGGTGGTGACGCCGGGTGCCACAGCCTATCTGCTGT
GCGATCGTTTTCCGCGCCTGATCGCGCTGTCGGTCGCCATCGGCACGCTGACCAGCTTTTTCGGCGCCTATATTTCCTAT
TATCTGGATGGCGCGACGGGCGGCATCATCGTCTGCCTGCAAACGCTGATCTTCCTTGCTGCGTTCATCTTTGCGCCCAA
ACACGGGCTGCTGGCAGCGCGGGCCAAGGCGCGCGCTGCCCTGCGTGAAAGCGAGGCGGCATGA

Protein sequence : 
MSVLFEPFTYSYMMNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHAVVPGVAGAYMLGLPFALGAFFAGGLAAAAML
FLSDRTGLKVDVVIGLIFTSFFGLGLFMVSINPMSVSVQTITMGNILAITPEDTLQLAIIGVVSLAILLLKWKDLMVVFF
DENHARSIGLRPNVLKAVFFVLLAACVVAAMQTVGAFLVIAMVVTPGATAYLLCDRFPRLIALSVAIGTLTSFFGAYISY
YLDGATGGIIVCLQTLIFLAAFIFAPKHGLLAARAKARAALRESEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-75 74
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-75 74
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-75 74
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-75 74
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-75 74
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-37 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-36 41
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-36 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-36 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC BAC0351 Protein 4e-75 74
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC BAC0441 Protein 6e-64 68
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC BAC0352 Protein 3e-37 41
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC BAC0442 Protein 4e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC VFG0527 Protein 4e-75 74
EIO_2655 YP_003965032.1 Mn+2/Fe+2 ABC transporter inner membrane protein SitC VFG0528 Protein 3e-37 41