Gene Information

Name : STAUR_6328 (STAUR_6328)
Accession : YP_003955912.1
Strain : Stigmatella aurantiaca DW4/3-1
Genome accession: NC_014623
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein yscr/hrcr
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7767575 - 7768195 bp
Length : 621 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGGTTCTGGCGGTGCTGTCCTTGCTGCCCTTCGCGGTGGTGATGCTCACGAGCTTTTCGAAAATCGCCGTGGTGCT
GTCGCTCGCGCGCTCGGCGATGGGGACCCAGCAGGCGCCCCCCACCGTCGTCCTGACGGGGCTGGCCGCGGTGCTCTCGG
CACACATCATGTCGCCCGTCATGGCGCGCATGTACGAGGTGGGGCGGGAGGCTGCCCGGGACGCAGAATCCGGAGCACAG
ATTCTCGCGGCGGTGGAGCGGACGGCGGAGCCTCTGCGCGCCTTCCTTGTCAAGCATGGCAGTGCGGAGGAGCGGAGCCG
CTTCGTGGAACTCGCGCGCGAGCTGCGGCCTCCCGAGGAGGCCACGCAGGTCCAGGAGGGAGACCTCTTCGTGGTGGTTC
CCGCGTTCGTCATCACCGAGCTGAAGGAGGCCTTTCAGATGGGCTTTCTCCTCTTCTTGCCGTTTCTCGTGCTGGACATG
GTCATCGCCAACATCCTGCTCGCGCTGGGCATGCAGAGCCTGTCTCCGAGCCAGGTCAGCCTGCCTTTCAAGATCCTCCT
GTTCGTGACTGTGGATGGCTGGCCACTGCTCGCGCAGGGGCTCATCCAGGGGTACCGGTGA

Protein sequence : 
MAVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESGAQ
ILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDM
VIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLAQGLIQGYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-35 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-35 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-35 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-36 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 8e-44 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-44 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-44 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-44 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-44 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-44 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-44 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-44 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STAUR_6328 YP_003955912.1 type III secretion apparatus protein yscr/hrcr VFG0044 Protein 6e-44 48
STAUR_6328 YP_003955912.1 type III secretion apparatus protein yscr/hrcr VFG0394 Protein 7e-38 45
STAUR_6328 YP_003955912.1 type III secretion apparatus protein yscr/hrcr VFG2494 Protein 2e-38 43
STAUR_6328 YP_003955912.1 type III secretion apparatus protein yscr/hrcr VFG0188 Protein 3e-38 42
STAUR_6328 YP_003955912.1 type III secretion apparatus protein yscr/hrcr VFG2338 Protein 3e-36 42