Gene Information

Name : STAUR_3046 (STAUR_3046)
Accession : YP_003952665.1
Strain : Stigmatella aurantiaca DW4/3-1
Genome accession: NC_014623
Putative virulence/resistance : Virulence
Product : type III secretion system inner membrane p family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3676525 - 3677358 bp
Length : 834 bp
Strand : +
Note : -

DNA sequence : 
GTGAGACCTTCGTCCGTCCGACCGCTCCTGTCGTCTCGAATCATCCCCTGGCTCTTCGCCACCACGGTCGCGCTTCAGCC
CGCGGTGGCGCTGGCGCAGCGCCGCCGTGGGGGCGGGGACGACCCCATTCCCGACAGCGTCGTCCAGGCCGCGACCAGCA
ACGAGTCCTTTGCCTCGCGGCCGCTCATCCTCATCCTGGCGCTGGCGGCCCTGTCGCTCGTGCCCTTCATGCTGATGATG
GTGACGAGCTTCGTGAAGATCTCGGTGGTGCTCTCCATCGTCCGCTCGGCGCTGGGCACCCAGCAGATTCCGCCCACGCA
GGTCATCACCGGCCTGGCCGTCATCCTCACCGTCTACATCATGGCCCCGGTGGGGCAGGAGATGTACAAGGCGGCGAAGG
TGGACATCTGGGCCAAGGGCCCCAGCCTGCTGTCCTCGGAGACGGTGGGCACGCTGCTCGAAGCCGCCGACCGCTCGAAG
GAGCCGCTGCGCGACTTCCTGGTGAAGAAGGTCAAGAACAAGGACCGGGCCTTGTTCTTCCACCTCGCCAAGAAGATGCG
CAAGGCGGAGGACCGCAAGGACATCGGGGACCGGGACTTCATGATCATCATCCCGGCCTTCGTGGTGTCCGAGCTGAAGG
AGGCCTTCCAGATCGGCTTCCTGCTCTTCGTGCCCTTCATCGTCATCGACATGGTGGTGGCCAACATCCTGCTCGCGCTC
GGCATGCACATGTTGTCGCCGACCACCATCTCCATGCCGTTCAAGCTCTTGCTCTTCGTGCTCGTGGACGGCTGGTATCT
CATCGCCAAGGGCCTGGTCGTCGGCTACCTGTAG

Protein sequence : 
MRPSSVRPLLSSRIIPWLFATTVALQPAVALAQRRRGGGDDPIPDSVVQAATSNESFASRPLILILALAALSLVPFMLMM
VTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAKVDIWAKGPSLLSSETVGTLLEAADRSK
EPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRKDIGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLAL
GMHMLSPTTISMPFKLLLFVLVDGWYLIAKGLVVGYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-39 45
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-40 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-40 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-40 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-37 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-40 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-34 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-34 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-34 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 6e-35 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 4e-30 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG0394 Protein 6e-37 46
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG0188 Protein 1e-41 45
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG0044 Protein 2e-44 45
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG1259 Protein 7e-36 45
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG2338 Protein 2e-36 44
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG2494 Protein 7e-38 44
STAUR_3046 YP_003952665.1 type III secretion system inner membrane p family protein VFG2016 Protein 1e-32 41