Gene Information

Name : PPSC2_c5404 (PPSC2_c5404)
Accession : YP_003949581.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase h
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 5682743 - 5683222 bp
Length : 480 bp
Strand : -
Note : -

DNA sequence : 
TTGTTTATTCAGCTTATAGGTGTGGGGAAGTTAAAAGAGAAATATTTGGTCATGGGCATTCAGGAATATGCTAAACGGCT
GGGGCCATACATCAAGTTTCAAATGATTGAGGTAGCGGACGAAAAGGCTCCAGACACACTGAGCGAGGCGGAAGTCCGAC
AGGTTAAGGAACGGGAAGGAGAGCGCATTCTTGCTCATGTGAAAAGTGAAGCACACGTGATTGTACTTGCCATCGACGGC
AAACTGTGGAGCTCGGAAGAACTCGCAGAGGAATTGGACAAGCTCGGCACCTACGGCACAAGCCATGTTGTCTTCGTCAT
TGGCGGCAGCCATGGACTCTCTGACGAAGTCCTCCGCCGCGCCCAGCAGAAGCTGAGCTTCGGAAGAATGACTTTGCCAC
ATCAGCTGATGCGATTGGTACTAGTGGAACAGATTTATCGGGCGGTGAAGATTAATCGGAGTGAACCGTATCATAAATAA

Protein sequence : 
MFIQLIGVGKLKEKYLVMGIQEYAKRLGPYIKFQMIEVADEKAPDTLSEAEVRQVKEREGERILAHVKSEAHVIVLAIDG
KLWSSEELAEELDKLGTYGTSHVVFVIGGSHGLSDEVLRRAQQKLSFGRMTLPHQLMRLVLVEQIYRAVKINRSEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-42 59
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-42 59
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-38 59
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-42 59
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 4e-42 59
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-42 59
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-42 59
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-42 59
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-42 59
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-42 59
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-42 59
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-42 59
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-42 59
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-42 59
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 2e-29 58
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-41 58
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 4e-41 57
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-41 57
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-39 55