Gene Information

Name : PPSC2_c5225 (PPSC2_c5225)
Accession : YP_003949403.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Virulence
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1131
EC number : -
Position : 5508314 - 5509240 bp
Length : 927 bp
Strand : -
Note : -

DNA sequence :
ATGCAGTATGTTATAGAAACAAAAAAGCTCCGTAAACAGTTCGGGATGTCAGTTGCCGTAGACGACATATCCTTACATGT
GGAGCGGGGCAGTATTTACGGTTTTCTTGGTGAGAATGGAGCTGGCAAGACCACTACCATCCGTATGCTGATGAGGCTGA
TTGAGCCTACAAGCGGGGAGGTTTTTTTATTTGGCGAACGGCTGGAGAAAAACTATCCGTCTATCTTTTCCAAGATTGGT
ACAATTATTGAAACGCCGGGTCTATATGAAAACTTGAGTGCACGCGATAATCTGAGAATATGCTGTAAGTACATGGGGAT
GAAGGATGATGGAAGAATAGAACGTACCTTAACCACGGTAGGTTTAGAGCACACCGGAAAAAAGAAGTTCAAAGATTTTT
CTCTAGGAATGAAGCAGCGATTAGGGATTGCCAGGGCACTTGTTCATGATCCTGAGTTGCTCATATTGGATGAGCCAACA
AACGGACTGGATCCATCTGGAATTAAGGAAATTCGTCAACTTTTGAAGCGGTTGTGCGAGGAAGACGGGAAAACAATTCT
TATTTCCAGCCACATTTTGAGCGAAATTCAGCAGTTAGCTACACACATCGGGATTATACATAATGGAAAACTGTTAGCGG
AAGATCGTTTGAGCCGGTTAGAGGAAGGCTTTGAGCAATATACAGATGTAAAGGTAGATGATGCAGAAGCAGTGCAAGCA
TTTCTGCAAGAGCACATGAAGCAGCTTCAATCTAATGTGATATCCCCACAACAACTAAGAATTCATAGTCAGATTGAGAA
TACAGCTGCGTTAAATAAGCAGTTAATAGATCATCAGTTTTCAGTCTATGAGATACACACCACAAAGCAGACACTGGAGG
AGTACTTTCTAACACTCATTTCAGAAGAGGGTGAGCGGCATGATTAG

Protein sequence :
MQYVIETKKLRKQFGMSVAVDDISLHVERGSIYGFLGENGAGKTTTIRMLMRLIEPTSGEVFLFGERLEKNYPSIFSKIG
TIIETPGLYENLSARDNLRICCKYMGMKDDGRIERTLTTVGLEHTGKKKFKDFSLGMKQRLGIARALVHDPELLILDEPT
NGLDPSGIKEIRQLLKRLCEEDGKTILISSHILSEIQQLATHIGIIHNGKLLAEDRLSRLEEGFEQYTDVKVDDAEAVQA
FLQEHMKQLQSNVISPQQLRIHSQIENTAALNKQLIDHQFSVYEIHTTKQTLEEYFLTLISEEGERHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
epiF YP_186701.1 epidermin immunity protein F Virulence vSa¥â Protein 2e-29 49
bsaF NP_646577.1 hypothetical protein Not tested vSa¥â Protein 2e-29 49
epiF YP_494453.1 lantibiotic epidermin immunity protein F Not tested vSa¥â Protein 2e-29 49
bsaF YP_001332745.1 lantibiotic immunity protein F Not tested vSa¥â Protein 2e-29 49
SSU05_0946 YP_001198312.1 hypothetical protein Not tested 89K Protein 1e-39 48
SSU98_0954 YP_001200512.1 hypothetical protein Not tested 89K Protein 1e-39 48
sboF YP_006309913.1 SboF Not tested FWisland_1 Protein 6e-47 42
cdd4 CAA63569.1 - Not tested PaLoc Protein 1e-49 41