Gene Information

Name : PPSC2_c5009 (PPSC2_c5009)
Accession : YP_003949189.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Virulence
Product : cobalmin/iron-siderophore ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5290604 - 5291497 bp
Length : 894 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTCGTCTGAAAACGGCAAATCTGGATATTGCTTATGAGGATCGATTAATCGTAGAAGATCTGAACGTAGAAATACC
GCAGGGAAAAATCACAGCATTGGTGGGGGCAAATGGCTCCGGTAAGTCAACCATTCTGAAAACGATGGCTCGCATCATGA
ATCCTAAAGGCGGTAGCGTTCTGCTGGATGGTAAATCCATTCATAAGCAATCCACCCGGGAGGTAGCGAAGCAGTTGGCT
ATTTTGCCGCAGAATCCGACTGCGCCGGAAGGGTTGACCGTGACGGAACTGGTATCTTACGGACGTTTCCCCTATCAAAA
AGGTTTTGGTTCCATGAAAGCGGAAGATCGCAAAATGGTAGAGTGGGCCATCCAAGTAACGGGAATGAGCGAATTTCACG
ATCGTCCGATTGATCAGCTTTCTGGTGGTCAGCGTCAGCGTGCCTGGATTGCTATGGCGCTTGCGCAAGATACGGATATA
TTGTTTTTGGATGAGCCGACTACATTTTTGGATATGGCGCATCAACTGGAAGTGCTGCATCTGTTAGAGTATCTGAATAC
TTCGGCAGAACGCACCATTGTTATGGTCGTGCATGACTTGAACCATGCAGCCCGGTATGCTCAGCATATGATTGCGATCA
AAAAAGGGAAAGCGAAGGCGGTAGGAGCCCCGACTGAGGTTATGACCCCCGATGTGCTGCGTGAGGTGTTCGGGATCGAG
GCGGATATTGTTACTGATCCTCGTACAGGGGTACCACTCTGTCTTCCGTATGCTTTGGCTGGTCAGCCTGCGGTAAGCCA
AGCAGTAAAGGGAATGAATGTAGAAGAGAAGCAAACGGTGGGTTCTGTTGCCGAGCGGCGTGATGCTAGACCACAAGTAG
CAGCAAGAGGTTAG

Protein sequence : 
MFRLKTANLDIAYEDRLIVEDLNVEIPQGKITALVGANGSGKSTILKTMARIMNPKGGSVLLDGKSIHKQSTREVAKQLA
ILPQNPTAPEGLTVTELVSYGRFPYQKGFGSMKAEDRKMVEWAIQVTGMSEFHDRPIDQLSGGQRQRAWIAMALAQDTDI
LFLDEPTTFLDMAHQLEVLHLLEYLNTSAERTIVMVVHDLNHAARYAQHMIAIKKGKAKAVGAPTEVMTPDVLREVFGIE
ADIVTDPRTGVPLCLPYALAGQPAVSQAVKGMNVEEKQTVGSVAERRDARPQVAARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-53 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-48 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-48 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-52 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 5e-55 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 5e-55 46
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-51 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-53 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-53 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-53 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 5e-53 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c5009 YP_003949189.1 cobalmin/iron-siderophore ABC transporter ATPase BAC0164 Protein 1e-52 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c5009 YP_003949189.1 cobalmin/iron-siderophore ABC transporter ATPase VFG0925 Protein 5e-52 48
PPSC2_c5009 YP_003949189.1 cobalmin/iron-siderophore ABC transporter ATPase VFG1042 Protein 1e-52 46