Gene Information

Name : PPSC2_c4682 (PPSC2_c4682)
Accession : YP_003948869.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Resistance
Product : na+/h+ antiporter nhad and like arsenite permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1055
EC number : -
Position : 4900410 - 4901717 bp
Length : 1308 bp
Strand : -
Note : -

DNA sequence :
ATGGAGGTTTTTAAAACATTGATTTTTTTGGCATGCATTATATTCTTAGTCACTTTAGTATTGGTCATCTGGCAGCCTAA
ACATCTGTCCATTGGGTGGTCTGCGTGCGGCGGTGCCATACTCGCCTTGCTGGTGGGGGTGGTGGATTTGCATGATGTTT
GGGAAGTTACTCGAATGGTCTGGAATGCAACACTAGCTTTTGTCGCCATTATACTGATTTCATTAGTCCTTGATAAAATT
GGTTTCTTCGAATGGGCAGCACTTCACATGGCACGGCTAGCCCGTGGAAGCGGAACCCGGATGTTTGTCTATGTGAGCCT
GCTGGGTGCCGTAGTTGCTGCCTTTTTTGCCAATGACGGCGCGGCTTTAATTTTGACACCAATTGTACTGGCGATGGTTC
GGGCACTGAAATTGGATGAGAAAATGGTATTTCCTTTTATCATAGCGAGCGGATTTATTGCAGATACGACATCGCTTCCG
CTTGTAGTCAGCAACCTCGTTAATATTGTGTCAGCCGATTTCTTTGGAATCAGTTTTATGGAATATGCGAGTCGTATGAT
TGTACCAAATCTGTTTTCCTTAGCGGCTAGTATCGTGGTACTGTATCTCTTTTTTCGCAAAAAAATTCCTAAAACGTTTG
ATGCGACACAGTTAATCACGCCTGCAAATGCGATAAAAGATCCAAAGATGTTCCGTATGTCCTGGGTCGTTCTCACAATA
TTGTTGGTTGGCTACTTTGCATGCGAATTTTTTGACATTCCCGTCTCGGTGGTGGCTGGTATCATTGCCATCCTTTTCTT
GCTGATGGCTAGAAGAAGCCCTGTGGTACCCATGAAAGAAGTCATCAAGGGAGCTCCATGGGCCATCGTATTTTTCTCTA
TCGGGATGTATGTGGTGGTGTATGGTCTGCGTAATGCCGGTTTGACGGATCTGCTGTCCCATGTGATTCAAGCGGCTGCT
GATCAAGGTATGTTTGTAGCTACCATGGCCATGGGTTTTATTGCGGCGATTATCTCGTCGAGTATGAATAACTTGCCCAC
GGTCATGATTGATGCACTTGCCATTAATGCCACTCATGCAACCAGTATGGTCAAAGAGGCACTGATTTATGCTAACGTCA
TTGGGTCGGATCTTGGACCAAAAATAACTCCAATCGGTTCATTAGCCACATTGTTGTGGCTACATGTACTTCGTTCCAAA
AACGTAAAAATTTCTTGGGGCACTTATTTCAAAACAGGCATCGTCTTAACTATTCCTACACTTTTTATTACCCTGCTGGG
CTTATATCTATGGTTAATCATTTCATAA

Protein sequence :
MEVFKTLIFLACIIFLVTLVLVIWQPKHLSIGWSACGGAILALLVGVVDLHDVWEVTRMVWNATLAFVAIILISLVLDKI
GFFEWAALHMARLARGSGTRMFVYVSLLGAVVAAFFANDGAALILTPIVLAMVRALKLDEKMVFPFIIASGFIADTTSLP
LVVSNLVNIVSADFFGISFMEYASRMIVPNLFSLAASIVVLYLFFRKKIPKTFDATQLITPANAIKDPKMFRMSWVVLTI
LLVGYFACEFFDIPVSVVAGIIAILFLLMARRSPVVPMKEVIKGAPWAIVFFSIGMYVVVYGLRNAGLTDLLSHVIQAAA
DQGMFVATMAMGFIAAIISSSMNNLPTVMIDALAINATHATSMVKEALIYANVIGSDLGPKITPIGSLATLLWLHVLRSK
NVKISWGTYFKTGIVLTIPTLFITLLGLYLWLIIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-135 69
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 8e-132 68
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 9e-138 68
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 1e-112 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0574 Protein 2e-135 68
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0575 Protein 2e-139 68
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0576 Protein 6e-112 59
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0578 Protein 4e-112 59
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0031 Protein 6e-109 58
PPSC2_c4682 YP_003948869.1 na+/h+ antiporter nhad and like arsenite permease BAC0577 Protein 5e-110 57