Gene Information

Name : PPSC2_c2375 (PPSC2_c2375)
Accession : YP_003946588.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 2458555 - 2459553 bp
Length : 999 bp
Strand : +
Note : -

DNA sequence :
GTGCTGTCAGTTACACTCGCAGTCATGCTGGGGCCTGTGGCTGTCGCTCCAGGGACAGTATGGCGAATTGCGCTGTCCCA
CTTGCCCTGGCTGGATCAGTGGGTACCCATGACATGGACCAAACCGGAGCAATATATCGTCTGGGAAATTCGCTTTCCGC
GTGTGCTGCTAGGTGTTGTCGTGGGAGCAGGGCTTGCTGTTACCGGAGCGGCTATACAGGCATTAATTCGCAATTCGTTA
GCGGACCCCTATATTCTAGGAGTCTCGTCGGGGGCTTCAGTGACAGCGACGTTAGTTATTGTGTTTGGAGCTTTTGGATT
TTTGGGACGACTTGCACTGCCCCTATCTGCTTTTATAGGCTCCTTAGCTGCAATGCTCATGGTGTTCGCGTTGGCTCGTG
TGGCCGGGCGTATATCGACGACCCGCTTGCTGTTGGCAGGGGTAGCGGTATCTATGATGCTGTCGGCTGTGACTAGCTTT
ATCGTTACGATGGCCCCGAATGAAAAAGGCATCCGTGACGCGATGTATTGGATGATGGGAAGTCTGGCAGGCGCTCAATG
GGATACGCTTTTTATTCCAAGCCTCATTATAACCGTTGGAACGGCCGTCCTTTTAACCCGATACCGTTCACTGAATGCTT
TGCTAACGGGGGAAGAAGCCGCCGTAACGCTCGGTGTGAACGTGCAGGCGTTCCGTGTATTATTGGTTGTTGTCGCTTCC
CTTTTAACCGGGGCAGTCGTATCAGTTAGTGGCTCAATTGGCTTTGTCGGGCTTATGATTCCACACATCGTTAGGCTAAT
AGTGGGATCGGATCATCGACGTGTCCTGCCTGTCAGCCTGCTTCTGGGAGCTATCTTTGTCGTGTGGGCAGACGTATGTG
CTCGGCTCGTGCTTGCTCCGCAGGAACTGCCGATTGGTATTGTAACGGCTGTATGCGGTGGACCCTTTTTTGTATGGCTG
CTGCGGCGCAGCTCCTACTCGTTTGGAGGCGAAAAATGA

Protein sequence :
MLSVTLAVMLGPVAVAPGTVWRIALSHLPWLDQWVPMTWTKPEQYIVWEIRFPRVLLGVVVGAGLAVTGAAIQALIRNSL
ADPYILGVSSGASVTATLVIVFGAFGFLGRLALPLSAFIGSLAAMLMVFALARVAGRISTTRLLLAGVAVSMMLSAVTSF
IVTMAPNEKGIRDAMYWMMGSLAGAQWDTLFIPSLIITVGTAVLLTRYRSLNALLTGEEAAVTLGVNVQAFRVLLVVVAS
LLTGAVVSVSGSIGFVGLMIPHIVRLIVGSDHRRVLPVSLLLGAIFVVWADVCARLVLAPQELPIGIVTAVCGGPFFVWL
LRRSSYSFGGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01919 YP_003784319.1 hypothetical protein Not tested PiCp 7 Protein 2e-29 45
Cp1002_1913 YP_005682168.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 2e-29 45
CpC231_1907 YP_005684260.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 2e-29 45
CpI19_1928 YP_005686352.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 4e-29 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c2375 YP_003946588.1 ABC transporter permease VFG0922 Protein 4e-23 43