Gene Information

Name : PPSC2_c1343 (PPSC2_c1343)
Accession : YP_003945563.1
Strain : Paenibacillus polymyxa SC2
Genome accession: NC_014622
Putative virulence/resistance : Virulence
Product : Mn2+ ABC transporter ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1483183 - 1483947 bp
Length : 765 bp
Strand : +
Note : -

DNA sequence : 
ATGGGACATTCACCACTTGTTGTTCGTGATTTATCGGTAGCCTATCAAAAAAAGCCCGTTTTGTTCGATGTCTCCTTTGA
GGTGCCGGAAGGTAAGCTGATTGGTATTATCGGCCCCAACGGGGCTGGCAAATCTACACTGATCAAGGCCGTGCTTGGGC
TGATTCCAAAGCTCAGGGGCGAGGTGCTGGTCTACGGCAAGCCCTATAAGCAACAGCTGCTCAAGGTTGGATATGTACCG
CAGCGGGAGTCGGTGGATTGGGATTTTCCGACGAATGCTCTAGATGTGGTTATGATGGGACGTTACGGCAGACTGGGCTG
GTTTAAACGTCCGGGAGCAGCAGATCGTCAGGCTGCGATGGAGAGTTTGGACAAGGTTGGAATGAGCAAATTTGCAGACA
GGCAGATTAGTCAATTGTCAGGCGGGCAGCAGCAACGCGTTTTTTTGGCGAGAGCGCTTGCGCAGGACGCTCAGCTTTAT
TTTATGGATGAACCGTTTGTCGGTGTGGACGCTGCAACAGAAAAAGCTATCATTTCATTGCTTAACGATCTGAAACAGCA
GGGGAAAACCGTGCTTGTCGTTCATCATGATTTATCTACGGTCACGGATTATTTTGACCAGGTTATGCTGTTGAACGGGC
ATCTGATGGCATTTGGAGAGACCGCAGATATTTTTACCGAGGGAAATCTGCAACGTACGTATGGCGGGCGTCTGAGTATA
CTCAAAACAGGTTCGGAATCCGGCACGATACTCGGAGTGAGGTGA

Protein sequence : 
MGHSPLVVRDLSVAYQKKPVLFDVSFEVPEGKLIGIIGPNGAGKSTLIKAVLGLIPKLRGEVLVYGKPYKQQLLKVGYVP
QRESVDWDFPTNALDVVMMGRYGRLGWFKRPGAADRQAAMESLDKVGMSKFADRQISQLSGGQQQRVFLARALAQDAQLY
FMDEPFVGVDAATEKAIISLLNDLKQQGKTVLVVHHDLSTVTDYFDQVMLLNGHLMAFGETADIFTEGNLQRTYGGRLSI
LKTGSESGTILGVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 9e-53 47
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-52 47
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-53 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-53 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-53 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-53 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-53 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c1343 YP_003945563.1 Mn2+ ABC transporter ATPase BAC0400 Protein 9e-71 63
PPSC2_c1343 YP_003945563.1 Mn2+ ABC transporter ATPase BAC0350 Protein 9e-54 44
PPSC2_c1343 YP_003945563.1 Mn2+ ABC transporter ATPase BAC0440 Protein 1e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPSC2_c1343 YP_003945563.1 Mn2+ ABC transporter ATPase VFG0526 Protein 9e-54 44