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Name : clpB (BBIF_0307) Accession : YP_003938086.1 Strain : Bifidobacterium bifidum S17 Genome accession: NC_014616 Putative virulence/resistance : Virulence Product : ATP-binding subunit of Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 367123 - 369786 bp Length : 2664 bp Strand : + Note : - DNA sequence : ATGGAACAGAAGTTCACCACCATGGCCCAGGAAGTCATCGGTGATGCGATTCAGAGCGCGTCTGCCGCGGGCAACGCGCA GGTCGAGACACTGCACGTGATGGATGCGCTGCTGCGTCAGGAAAACGGCGTGATTCAGGGACTGATTCAGGCGGCGGGCG GCAACCCGCAGGCGATTGGCGCCGCGGTGCGCAATGCTCTGGTCAAGATGCCGGCGGCGAGCGGGTCCACCACATCGCAG CCGCAGGCGAGCCGCCAGCTGACGGCGGCGCTGGCACAGGCCGAGAAGGAGATGCAGCAGATGGGCGACGAGTACGTCTC CACCGAGCACCTGCTCATCGGCATCGCCGCATCCGCGCCGAACCAGAGCGCGGACATCCTCAAGGCGAACGGCGTGACGG CCGCGGCGCTGCGCAAGGCCGTCCCCGGCGTGCGCGGCGGCGCCAAGGTCACCAGCCCGGACGCTGAGGGCAGCTACAAG GCGTTGGAGAAGTACTCCACCGATCTGACCGCCCGCGCCAAGGAGGGTAAGCTCGACCCGGTGATCGGGCGTGATCAGGA GATCCGCCGTGTGATCCAGATCCTGAGCCGCCGCACCAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGA CCGCCGTCGTGGAGGGCCTCGCCCAGCGTATCGTGGCCGGCGATGTGCCGACCACGCTGCAGAACAAAAAGCTCATCAGC CTCGATTTGGGGTCGATGGTTGCCGGCTCGAAGTACCGTGGCGAGTTCGAGGAGCGCCTCAAGAGCGTGCTCAACGAAAT CAAGAACGCCGACGGCCAGATCATCACGTTCATCGACGAGATTCATACGATCGTCGGCGCTGGCGCGGCCGAAGGCTCGA TGGATGCCGGCAACATGCTCAAGCCCATGCTGGCGCGCGGCGAGCTTCGCCTGATCGGCGCGACCACGCTGGACGAGTAC CGCGAGAACATCGAGAAGGACCCGGCGCTTGAGCGTCGTTTCCAGCAGGTGTTCGTGGGCGAGCCGAGCGTGGAGGACAC GATCGCGATTCTGCGTGGCCTGAAGCAGCGTTACGAGGCGCACCACAAGGTGACGATCGGCGACGACGCGCTGGTCGCCG CCGCGACGCTCTCGAACCGCTATATTTCCGGCCGTCAGCTGCCCGACAAGGCCATCGATCTGGTCGATGAGGCGGCCGCG CACCTGCGCATGGAGCTCGACTCCTCCCCGGAGGAGATCGACGAACTGCAGCGCAAGGTCACGCGCTACGAGATGGAGGA GATGCAGCTCAAGAAGGCCGAGGATCCAGCCAGCAAGGAGCGCTTGGAGAAGCTGCAGAACGAGCTCGCGAACACTCGCG AGAAGCTGAGCGGCCTCAAGGCCCGCTGGGATGCGGAGAAGGCCGGCCACAACAAGGTCGGCGACCTGCGCGCCCAGCTG GACGCCAAGCGCGTCGAGGCTGACAAGTTCACCCGTGAGGGCAACTTGGCCGAGGCGTCGAAGATCCTGTACGGCGAGAT TCCGGCGATTCAGAAGCAGCTGGACGCGGCCGAGAAGGCCGATGCGGAAGACGGCGCGACGGGCGAGATCAAGCCCGAGC CGATGGTGCCCGACCATGTGGACGCCGATTCGGTGGCCGGCATCGTCTCCGAGTGGACCGGCATCCCCGTCGGTCGCCTG ATGCAGGGCGAGAACGAGAAGCTGCTGAGCATGGAGGACTACCTCGGCAAGCGCGTGATCGGCCAGAAGGAAGCGATCGC GGCGGTGAGCGACGCGGTGCGTCGTTCACGCGCCGGCATCAGCGACCCGAACCGTCCGACCGGCTCGTTCCTGTTCCTCG GCCCCACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTCGCCGACTTCCTGTTCGACGACGAGAAGGCCATGGTCCGC ATCGATATGTCGGAGTACATGGAGAAGGCGTCTGTGAGCCGTCTGATCGGCGCCGCGCCCGGCTACATCGGCTATGAGGA AGGCGGCCAGCTGACCGAGGCCGTGCGTCGTCGTCCGTACTCGGTGGTGCTGTTCGACGAAGTCGAGAAAGCTAACCCCG AAGTCTTCGACGTGCTGCTGCAGGTGCTGGACGACGGGCGTCTGACCGACGGCCAAGGCCGGACTGTGGACTTCAAGAAC ACGATCCTGATCATGACCTCGAACCTCGGCTCGCAGTTCCTGGTGAACCAGGACATGGACGCGGACGCCAAGAAGAAGGC CGTGATGGACGCGGTGCACATGAACTTCAAGCCGGAGTTCCTGAACCGTCTGGACGAGATCGTGATGTTCCATCCGCTGA CCCGTGAGGAGCTGGGCGGCATCGTCAACATCCAGGTCGCTCAGGTGGCCTCGCGTCTGACGGATCGCCGCATCAAGCTC GACGTCACCGACGCGGCTCGCGAATGGCTCGCCAACACCGGCTATGACCCGGCGTACGGCGCTCGTCCGCTGCGCCGTCT GGTGCAGACCGAGGTCGGCGACCAGCTGGCGCGCATGCTGCTCGCCGGCAAGGTACACGACGGCGACACCGTGCTCGTCG ACCAGACCGGTGGCGAGCATCTGGAACTCGGTACCATGCCCGAGGATCCGGATGCCGGATCCGATACCGACGTCACGGTC GAAGACGTCACCGAAGACAAGTGA Protein sequence : MEQKFTTMAQEVIGDAIQSASAAGNAQVETLHVMDALLRQENGVIQGLIQAAGGNPQAIGAAVRNALVKMPAASGSTTSQ PQASRQLTAALAQAEKEMQQMGDEYVSTEHLLIGIAASAPNQSADILKANGVTAAALRKAVPGVRGGAKVTSPDAEGSYK ALEKYSTDLTARAKEGKLDPVIGRDQEIRRVIQILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPTTLQNKKLIS LDLGSMVAGSKYRGEFEERLKSVLNEIKNADGQIITFIDEIHTIVGAGAAEGSMDAGNMLKPMLARGELRLIGATTLDEY RENIEKDPALERRFQQVFVGEPSVEDTIAILRGLKQRYEAHHKVTIGDDALVAAATLSNRYISGRQLPDKAIDLVDEAAA HLRMELDSSPEEIDELQRKVTRYEMEEMQLKKAEDPASKERLEKLQNELANTREKLSGLKARWDAEKAGHNKVGDLRAQL DAKRVEADKFTREGNLAEASKILYGEIPAIQKQLDAAEKADAEDGATGEIKPEPMVPDHVDADSVAGIVSEWTGIPVGRL MQGENEKLLSMEDYLGKRVIGQKEAIAAVSDAVRRSRAGISDPNRPTGSFLFLGPTGVGKTELAKALADFLFDDEKAMVR IDMSEYMEKASVSRLIGAAPGYIGYEEGGQLTEAVRRRPYSVVLFDEVEKANPEVFDVLLQVLDDGRLTDGQGRTVDFKN TILIMTSNLGSQFLVNQDMDADAKKKAVMDAVHMNFKPEFLNRLDEIVMFHPLTREELGGIVNIQVAQVASRLTDRRIKL DVTDAAREWLANTGYDPAYGARPLRRLVQTEVGDQLARMLLAGKVHDGDTVLVDQTGGEHLELGTMPEDPDAGSDTDVTV EDVTEDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-102 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 7e-106 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-106 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_003938086.1 | ATP-binding subunit of Clp protease | VFG2076 | Protein | 4e-117 | 42 |
| clpB | YP_003938086.1 | ATP-binding subunit of Clp protease | VFG2084 | Protein | 8e-110 | 42 |
