Gene Information

Name : CLOST_2533 (CLOST_2533)
Accession : YP_003937553.1
Strain : Clostridium sticklandii DSM 519
Genome accession: NC_014614
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 2663293 - 2663772 bp
Length : 480 bp
Strand : -
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence :
ATGAATATAAAAATAATCTCAGTAGGCAAGCTAAAAGAAAAATACCTAAAGCTAGGGATAGAGGAATTCACAAAAAGACT
TTCAAAATACTGCTCCCTAGAAATCATAGAGGTGGATGACGAGAAAGCTCCAGAAAACCTCAGCGACAAAGAAATGATTA
TGATAAAGGATAAAGAGGGCGATAAAATCCTATCTAAAATAAAGGATAATACCTACGTCATAGCCCTAGCAATAGACGGC
AAAATGCTCTCATCAGAAGACCTAGCAGAAAAACTAGAAGACCTAGCTATCACCGGCAAAAGCAACATAGCTTTTGTAAT
CGGTGGATCTCTAGGTCTATCTGACGCTGTACTAAAAAGAGCAGACTATAAGCTATCATTTTCAAAAATGACATTTCCAC
ACCAGATGATGAAACTAATACTTCTAGAGCAGGTTTATAGGGCGTATAGGATTATTAAGGGGGAACCGTATCATAAATAA

Protein sequence :
MNIKIISVGKLKEKYLKLGIEEFTKRLSKYCSLEIIEVDDEKAPENLSDKEMIMIKDKEGDKILSKIKDNTYVIALAIDG
KMLSSEDLAEKLEDLAITGKSNIAFVIGGSLGLSDAVLKRADYKLSFSKMTFPHQMMKLILLEQVYRAYRIIKGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 1e-34 63
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 6e-48 62
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 7e-48 61
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-47 61
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 7e-48 61
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 7e-48 61
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 7e-48 61
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 7e-48 61
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 7e-48 61
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 7e-48 61
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 7e-48 61
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 7e-48 61
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 7e-48 61
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-47 61
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-46 60
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-46 60
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-46 60
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 7e-47 60
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-43 59