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Name : CLOST_2517 (CLOST_2517) Accession : YP_003937537.1 Strain : Clostridium sticklandii DSM 519 Genome accession: NC_014614 Putative virulence/resistance : Unknown Product : site-specific DNA recombinase (modular protein) Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1961 EC number : - Position : 2648799 - 2650448 bp Length : 1650 bp Strand : - Note : - DNA sequence : ATGGGGATTAAGACAGACGGATTGCTTGAAAATTTCTTAAAACAATATCGTGCAGGTGTTTATATACGGGTATCGACCCA TGAACAAGCTGAACATGGATTTTCTTTAGAAGGTCAAGATGAGCATACTGAAAAGTATGCTGACCTTTTCAATATGGAGA TTGTCGAAAAGTATATTGACAGCGGTATTAGCGGTAAGTCAATGGAGGCTAGACCAGCTCTCCAGCGCATGATCAGAGAT GTTAAAGATGGAAAATTAGACAAAATAATAACATGGAAGGTCAGTCGTATTGCTAGAAACAATAGAGACTTGCTTAACTT GTTAAAGATACTCAATGACCATGAAGTGGCGTTGATCAGTATATCTGAGGGTATTGACACATCAAGCATGATGGGCAAAA TGATGCTTCAATTCTTAGGCATCATGGCTGAATTCGAGAGATATACAATCATTGAGAACGTGAAAATGGGGATGGAGCGA AGAACAAAATTGGGACTGAAAAATGGCGGACGTATGTTAGGTTATCGTTCTGTCGGTGAAGGTCGTGAAAGCAAACTTGT TATTGATGAAAGAGAAGCTGAGATAGTTAGTTTGATTTTCAAACTCTACATATCGGGGAAAGGGTACAAAGCCATTGCCA ATGATCTTAACAAGAAAGGGCATAAAACAGTTAAAGGAAACAACTTTTCGATCACAGCAGTAAAAGGCATACTGGAAAAC CCGACTTACATTGGGAAAATAAGATACAACCAGTATGTTGATTACGCCAATAAACGACGAAAAGGAAAGAACGACGATGT GCTTCTTGTCGATGGTGTACATGAAGCCATAATTGATGAAATCACATGGAACCAAGCAAGATACATTCAGAGTAAAAAAA CAAAGAATAGCACAAAGAATACGGGTAAATATCCACTAACAGGTATTCTTAGATGTCCAGAGTGCGGTTATGGCATGGTT GCGGCAGGCACAACAAATAAGTTGAAAGATGGAACAAGCAAACGAATACGCTATTACAGTTGTGGACAGTTTCATAATAA AGGGTCAGCAGTGTGTCACGCTAATTCAGTGAGGGCAGAATATGCAGAGGCTTATGTGTTTGAGCAAGTTAGCCAGTTCT TGAATAACGATGGACTGATTAAGAAGATTGTCAAGAAGCTGAACCATGATCGTAAAGCTGGAATCGCTCCAATGTTCAAG AAACGAGACCGAATTGAGCGAGAAATTTCAAAGGCTGCTGAACGAAAGAAAAAGGATATCTTGTTGTATGAAGACGGAAT ATTAAGCAAACAGGATATCATGGGAAGAATAGAAGCAGTTGACTCTGAAATTGAGTCAATGATTGGAGAGTTGGACGAAG TTAAACAAGAACTGGTGTTGTTTAATCACTGCGATGTTCCAGTCGAGCAGGTTCAAAATATATTTGCGAACCTAGCTGAA CTTTTGGTTAGTGCAGATGCGATTGAGCGACAAAGATTACTCAAGCTTATTGTTGACAAAATTACGGTCAAGGACAAGAA AATCGAAAATATTCACATCGAATACAATCCTATCATCCAAGGAATGATGGATGAAATGAACGAAGAAGAAGGCGAGATTT CCACTATGGAGACCTCGCCTTCTTTTTATGAGTTTAGGGCTGTGATTTAA Protein sequence : MGIKTDGLLENFLKQYRAGVYIRVSTHEQAEHGFSLEGQDEHTEKYADLFNMEIVEKYIDSGISGKSMEARPALQRMIRD VKDGKLDKIITWKVSRIARNNRDLLNLLKILNDHEVALISISEGIDTSSMMGKMMLQFLGIMAEFERYTIIENVKMGMER RTKLGLKNGGRMLGYRSVGEGRESKLVIDEREAEIVSLIFKLYISGKGYKAIANDLNKKGHKTVKGNNFSITAVKGILEN PTYIGKIRYNQYVDYANKRRKGKNDDVLLVDGVHEAIIDEITWNQARYIQSKKTKNSTKNTGKYPLTGILRCPECGYGMV AAGTTNKLKDGTSKRIRYYSCGQFHNKGSAVCHANSVRAEYAEAYVFEQVSQFLNNDGLIKKIVKKLNHDRKAGIAPMFK KRDRIEREISKAAERKKKDILLYEDGILSKQDIMGRIEAVDSEIESMIGELDEVKQELVLFNHCDVPVEQVQNIFANLAE LLVSADAIERQRLLKLIVDKITVKDKKIENIHIEYNPIIQGMMDEMNEEEGEISTMETSPSFYEFRAVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccrB | BAB72109.1 | cassette chromosome recombinase B | Not tested | Type-IVa SCCmec | Protein | 2e-78 | 45 |
| SAMSHR1132_00400 | YP_005324563.1 | site-specific recombinase | Not tested | Type-IIIinv SCCmec | Protein | 2e-77 | 45 |
| ccrB | BAB72128.1 | cassette chromosome recombinase B | Not tested | Type-IVb SCCmec | Protein | 2e-78 | 45 |
| ccrB | YP_492757.1 | cassette chromosome recombinase B | Not tested | Type-IV SCCmec | Protein | 2e-77 | 45 |
| SSP0035 | YP_300125.1 | cassette chromosome recombinase B | Not tested | SCC15305RM | Protein | 5e-76 | 45 |
| SE0036 | NP_763591.1 | cassette chromosome recombinase B | Not tested | SCCpbp4 | Protein | 1e-77 | 45 |
| ccrB | YP_039530.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 2e-76 | 45 |
| ccrB2 | BAC67561.1 | cassette chromosome recombinase B2 | Not tested | Type-IVc SCCmec | Protein | 1e-77 | 45 |
| SERP2499 | YP_190041.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 2e-76 | 45 |
| ccrB2 | DAA01833.1 | cassette chromosome recombinase B type 2 | Not tested | SCCpbp4 | Protein | 1e-77 | 45 |
| ccrB | NP_644853.1 | cassette chromosome recombinase B | Not tested | Type-IV SCCmec | Protein | 2e-76 | 45 |
| SE0056 | NP_763611.1 | cassette chromosome recombinase B | Not tested | SCCpbp4 | Protein | 9e-72 | 45 |
| ccrB4 | DAA01835.1 | cassette chromosome recombinase B type 4 | Not tested | SCCpbp4 | Protein | 7e-72 | 45 |
| ccrB | NP_370585.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 3e-76 | 44 |
| ccrB | NP_373297.1 | cassette chromosome recombinase B | Not tested | Type-II SCCmec | Protein | 3e-76 | 44 |
| ccrB | BAA82196.1 | site-specific recombinase | Not tested | Type-II SCCmec | Protein | 2e-76 | 44 |
| ccrB1 | BAB83487.2 | site-specific recombinase | Not tested | SCC 12263 | Protein | 1e-72 | 41 |
