Gene Information

Name : cbrD (Pvag_pPag20045)
Accession : YP_003933381.1
Strain :
Genome accession: NC_014563
Putative virulence/resistance : Virulence
Product : achromobactin transport ATP-binding protein cbrd
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : 3.6.3.-
Position : 38341 - 39135 bp
Length : 795 bp
Strand : +
Note : ABC-type transport systems, ATPase component

DNA sequence : 
GTGTCACTTTCAACTCATAAGCTTAACGTAAGCTATTCACAGCAACAGGTAATCCACTCGCTTGATCTGACCCTGCCTGT
AGCGAAAGTTTGTGTGCTTATCGGCAGTAACGGTTGTGGTAAAAGCACGCTGCTCCGGGCGATGGCAAGACTCCAGAAAC
CGCAGTCGGGCACGATCATACTGGACGGGATGGATATTCATGCCAGCAGTACGGCGCAGGTCTCGCGCAAGCTGGCGATT
CTGCCGCAGATGCCCGTCCCACCAGAAGGAATTTCAGTACGTCAGCTGGTCAGCCTGGGGCGTTTACCTTATCAAACCTG
GCTGCGTCAGTGGTCAGCAGAAGATGAAAAACAGGTAGATGAGGCACTTCGCCTGACCAGCACTGATACATTACAGCATC
GTCCTGTGGATTCATTATCGGGCGGGCAGCGACAGCGCGTCTGGATTGCCATGACGCTGGCGCAGGCAACTGATACGTTG
ATGCTGGATGAGCCTACAACCTATCTCGATTTAGCCCATCAGGTTGAAGTGCTGGAGCTGTTACGCAGCTTAAATCAGAC
ACAGGGCAAAACCATCATTATGGTTCTGCACGATCTTAATCTGGCCTGTCGCTATGCTGATCATCTTGTCGCCATACGCG
ACGGACGAATTTTTGCACAGGGCGCGCCAAAGGAAATTATGACTGAACCGCTGGTGAATAAAGTATTCAATCTGCAGTGC
CGGATTATTGAGGATCCTTTCTTTCACTCACCGCTGTGCATTCCTTTTCCCGGAGCATTGCATGCTGACGCCTGA

Protein sequence : 
MSLSTHKLNVSYSQQQVIHSLDLTLPVAKVCVLIGSNGCGKSTLLRAMARLQKPQSGTIILDGMDIHASSTAQVSRKLAI
LPQMPVPPEGISVRQLVSLGRLPYQTWLRQWSAEDEKQVDEALRLTSTDTLQHRPVDSLSGGQRQRVWIAMTLAQATDTL
MLDEPTTYLDLAHQVEVLELLRSLNQTQGKTIIMVLHDLNLACRYADHLVAIRDGRIFAQGAPKEIMTEPLVNKVFNLQC
RIIEDPFFHSPLCIPFPGALHADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-62 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-54 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-57 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-57 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-55 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-55 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-55 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-55 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-52 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-52 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-52 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-52 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-50 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 5e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_003933381.1 achromobactin transport ATP-binding protein cbrd BAC0164 Protein 2e-54 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cbrD YP_003933381.1 achromobactin transport ATP-binding protein cbrd VFG1042 Protein 2e-54 48
cbrD YP_003933381.1 achromobactin transport ATP-binding protein cbrd VFG0925 Protein 2e-59 47