Gene Information

Name : phoP (Pvag_0934)
Accession : YP_003930577.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : Response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 982625 - 983293 bp
Length : 669 bp
Strand : -
Note : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGTGTTCTGGTTGTTGAAGACAATGCCCTGCTGCGCCATCATCTCGCCGTCCAGTTACGTGACATGGGCCATCAGGT
TGATGCCGCCGAAGACGCCAAAGAAGCTGACTATTTTCTCCGCGAACATCTGCCCGATATCGCGCTGGTGGATCTCGGCC
TGCCGGATGAAGATGGCATGTCGCTGATTCGCCGCTGGCGCAGTGATGCCGTGCGTCAGCCCATTCTGGTGCTGACCGCC
CGTGAGGGCTGGCAGGCGAAAGTCGAAGCGCTGGAAGCCGGTGCGGATGACTATGTCACCAAACCGTTTCACATTGAAGA
GGTCGCGGCACGCCTGCAGGCGCTGATGCGCCGCAACAGCGGTCATGCGTCGCAAATCATCGATATGGCCCCGTTTCAGG
TCGATCTCTCACGCCGTGAGCTGACGGTGAATGAAGAGCCAGTAAAACTCACCGCCTTTGAGTACACCATTGTCGAGACG
CTAATCCGAAATGCGGGCAAAGTGGTGAGCAAAGACTCGCTGATGCTGCAGCTCTATCCTGACGCTGAACTGCGCGAGAG
CCACACCATCGACGTCCTGATGGGTCGTCTGCGCAAAAAGATTCTGGCGTTGCACCCCACTGATGTCATTGCCACCGTGC
GTGGCCAGGGTTACCGCTTTGATCTCTGA

Protein sequence : 
MRVLVVEDNALLRHHLAVQLRDMGHQVDAAEDAKEADYFLREHLPDIALVDLGLPDEDGMSLIRRWRSDAVRQPILVLTA
REGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSGHASQIIDMAPFQVDLSRRELTVNEEPVKLTAFEYTIVET
LIRNAGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKILALHPTDVIATVRGQGYRFDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 3e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_003930577.1 Response regulator CP000647.1.gene1136. Protein 3e-87 84
phoP YP_003930577.1 Response regulator CP001138.1.gene1939. Protein 3e-87 84
phoP YP_003930577.1 Response regulator BAC0530 Protein 2e-87 84
phoP YP_003930577.1 Response regulator CP001918.1.gene2526. Protein 4e-87 83
phoP YP_003930577.1 Response regulator CP000034.1.gene2022. Protein 8e-87 83
phoP YP_003930577.1 Response regulator NC_002695.1.913289.p Protein 5e-86 82
phoP YP_003930577.1 Response regulator CP004022.1.gene1005. Protein 2e-77 73
phoP YP_003930577.1 Response regulator NC_002516.2.879194.p Protein 3e-53 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoP YP_003930577.1 Response regulator VFG0475 Protein 3e-87 84