Gene Information

Name : pagC (Pvag_0918)
Accession : YP_003930561.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : virulence membrane protein pagC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 963827 - 964390 bp
Length : 564 bp
Strand : +
Note : Opacity protein and related surface antigens

DNA sequence : 
ATGACCTCTAAGTTAACGATGCTGGCATTACTGTGTGGGGGTTTGTTCGTGGGCAGCAATGCGCTGGCTGATAATCACAC
TGTCTCGATCGGCTATGCTCAAAGCAAAGTTGATGACTTCAAAAACATTCGCGGTGTCAATGTTCAGTATCGCTATGAGT
GGGACTCTCCTCTCAGCGTTATTGGTTCGTTCAGCTATCTCAAAGGCGATCAAAGTTTTTCTGAGCGCGAAGATTTTTAT
GGCGATGTCAGCGGGTATGACGGCAAAACTAAAGTGAAATATTACTCACTGATGGCTGGTCCGGCATATCGTATCAATGA
CTATGTCAGCTTCTATGGATTGATCGGTGTTGCCCATACCAAAGTGGATGAGAACGTGACTTATCTCGGAGCGTATTCCG
AAGATTATAGCGAAAATAAATCCTCTTTTGCCTATGGCGCAGGTATTGTCGTGAATCCAGTCAGCAACCTCTCTGTGAGT
GTTGGCTATGAAGGTACTCGCGTGAAATATAACGAAGATGTTGCTATCAATGGTTTCAACATTGGTATCGGCTACCGTTT
CTGA

Protein sequence : 
MTSKLTMLALLCGGLFVGSNALADNHTVSIGYAQSKVDDFKNIRGVNVQYRYEWDSPLSVIGSFSYLKGDQSFSEREDFY
GDVSGYDGKTKVKYYSLMAGPAYRINDYVSFYGLIGVAHTKVDENVTYLGAYSEDYSENKSSFAYGAGIVVNPVSNLSVS
VGYEGTRVKYNEDVAINGFNIGIGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 3e-34 54
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 5e-35 54
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 1e-33 53
pagC AGI37340.1 PagC Virulence OI-122 Protein 2e-24 51
pagC AGI37347.1 PagC Virulence OI-122 Protein 2e-24 51
pagC AGI37348.1 PagC Virulence OI-122 Protein 5e-24 51
pagC AGI37351.1 PagC Virulence OI-122 Protein 3e-24 51
pagC AGI37344.1 PagC Virulence OI-122 Protein 5e-24 50
pagC AGI37346.1 PagC Virulence OI-122 Protein 5e-24 50
pagC AGI37343.1 PagC Virulence OI-122 Protein 2e-23 50
pagC AGI37350.1 PagC Virulence OI-122 Protein 5e-24 50
pagC AGI37353.1 PagC Virulence OI-122 Protein 2e-23 50
pagC AGI37341.1 PagC Virulence OI-122 Protein 1e-23 50
pagC AGI37349.1 PagC Virulence OI-122 Protein 1e-23 50
pagC AGI37352.1 PagC Virulence OI-122 Protein 1e-23 50
pagC AGI37337.1 PagC Virulence OI-122 Protein 5e-24 50
pagC AGI37342.1 PagC Virulence OI-122 Protein 5e-24 50
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 2e-24 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pagC YP_003930561.1 virulence membrane protein pagC VFG0442 Protein 7e-25 44