Gene Information

Name : ybgA (Pvag_0533)
Accession : YP_003930187.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 557362 - 558318 bp
Length : 957 bp
Strand : +
Note : Uncharacterized conserved protein

DNA sequence : 
ATGAGCAAAAAAATCCCCGTTGGAATCAGTGCATGCCTGCTCGGCGATAGCGTGAGGTTTGATGGTGGCCATAAGCGTCT
TACTTTTGCAACTGAGGATCTTACGCCATTTGTCCGCTTTGAGCCGATCTGTCCTGAAATGGCGATTGGGCTGCCTACGC
CGCGTCCGGCATTGCGTCTGGTAAAGCAGGGTGATGATGAGGTGCATCTTTGCTTCAGCAAAGACGGCGGCGAAGAAGTC
ACCGCTCAGATGCGTGACTGGTCTGCGGAGCGGGTAAAATCGCTGCATCATCTCTCCGGTTATATCCTGTGCGCCAAGTC
GCCCAGCTGCGGGATGGAGCGCGTACGGGTCTACGAACCCGACAACAACAATAACCGCAAAGTGGGCACCGGCATTTTTG
CTGAATTCCTGCAGCGCGAGATGCCCTGGCTGCCGCTGGAAGAGGATGGTCGTCTGCACGATCCCGCTCTGCGAGAGAAC
TTTATCGGCCGTATCTGCGCACTGCATGAATTTAATCAGATGTGGGAAAGCGGCCTGACCCGTCACGGGCTGATCGCCTT
TCACAGCCGCTACAAACTGATGATGCTGGCGCATTCGCAGGAGAAATATCGCGAGCTGGGACCCTTTGTTGCTTCGATGA
GCCAGTGGGACTCGCTGGATGCCTTTGCCTTTGAGTACCGCAATCGCATGATGGAACTGATGTCACGTCCCGCCTCACGT
CGTAATCACACCAATGTGCTGATGCACGTGCAGGGCTACTTCCGCCGCCAGCTAAGCTCACCGCAGCGTCAGGAGCTTGC
AACGCTGATTGACCGCTATCGTCAGGGTACACAACCGCTGCTGGTGCCCATTACCATTCTCAAGCACTACATGGCTGAGT
TTCCGCATCCGTGGCTGGCACAGCAGCGCTATTTCGATCCCTATCCCGAAGCCTTGTGCTTACGCTACGGACAGTAA

Protein sequence : 
MSKKIPVGISACLLGDSVRFDGGHKRLTFATEDLTPFVRFEPICPEMAIGLPTPRPALRLVKQGDDEVHLCFSKDGGEEV
TAQMRDWSAERVKSLHHLSGYILCAKSPSCGMERVRVYEPDNNNNRKVGTGIFAEFLQREMPWLPLEEDGRLHDPALREN
FIGRICALHEFNQMWESGLTRHGLIAFHSRYKLMMLAHSQEKYRELGPFVASMSQWDSLDAFAFEYRNRMMELMSRPASR
RNHTNVLMHVQGYFRRQLSSPQRQELATLIDRYRQGTQPLLVPITILKHYMAEFPHPWLAQQRYFDPYPEALCLRYGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 1e-91 56
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 1e-91 56
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 1e-91 56
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 2e-91 56
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 1e-91 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybgA YP_003930187.1 hypothetical protein VFG0490 Protein 6e-92 56