Gene Information

Name : fepD (Pvag_3660)
Accession : YP_003933227.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : ferric enterobactin transport system permease fepD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 3889577 - 3890566 bp
Length : 990 bp
Strand : +
Note : ABC-type Fe3+-siderophore transport system, permease component

DNA sequence : 
ATGCGTCAACTCCGTGCAATAGCCGGTTCAGGGATGCTGCTATTGTTGCTTATTGCGCTCAGCCTGATGCTGGGAGCCAG
ACCTGTACCCTTTCATGATGTCACACATGCCTTACTCTCCGACTGCAGCCGCATCGATTGCGTGATCGTGCGCGATGCCC
GGCTGCCGCGAACCCTTGCGGGACTGCTGGCCGGGATCAGTTTAGGTCTGGCGGGCGCACTGATGCAGAGCCTGACGCGC
AATCCCCTGGCCGATCCAGGCATTCTTGGTGTGAATGCCGGAGCGGGTTTTGCGGTGGTGCTTGGCATCGCCCTCTCTGG
CGCCGATTCTCCTGCGGAATGGCTGGGTTTTGCTTTTACGGGTGCACTGCTGGCGTCGCTGCTGGTGGCCATGACGGGTG
CGATCGGCGGCGGCCGCGTGAATCCGCTGCGTCTGACGCTGGCAGGCGTGGCGCTGGGTGCGGTGCTGGAGGGTTTAACA
TCTGGCCTGTCGCTGCTTAATCCCGATATTTACGATCATCTGCGTTTCTGGCACAGCGGCTCGCTGGATATCCGCAATTT
CGCCATTCTGCGCACTGTCTTTCCGGCGGTCGTAGCCGGGAGCCTGCTGGCGTTGCTGCTGGCACGTTCGCTCAACAGCC
TGAGTATGGGCGGAGATATGGCAACCGCGCTGGGCACCCGTGTGATGCGTACTCAACTGGTGGGATTGCTGGCGATTGCA
CTGCTGAGCGGTGCGGCGACGGCGGCAGTCGGCCCCATCGCCTTTGTCGGGTTAATGACACCGCATCTGGCCCGCTGGCT
GCTGGGCAACGATCATCGCTGGATGCTGCCGGGAACCCTGGTGATCACTCCCTGTCTGCTGCTGGCGGCCGATATTCTGG
GACGGCTGCTGGTGCCGGGTGAACTGCGCGTGTCAATTGTCACGGCCATTCTCGGTGCGCCGATGCTGATTGTGCTGGTG
CGCCGTAAGCTGGGAAGAGGGCAGATATGA

Protein sequence : 
MRQLRAIAGSGMLLLLLIALSLMLGARPVPFHDVTHALLSDCSRIDCVIVRDARLPRTLAGLLAGISLGLAGALMQSLTR
NPLADPGILGVNAGAGFAVVLGIALSGADSPAEWLGFAFTGALLASLLVAMTGAIGGGRVNPLRLTLAGVALGAVLEGLT
SGLSLLNPDIYDHLRFWHSGSLDIRNFAILRTVFPAVVAGSLLALLLARSLNSLSMGGDMATALGTRVMRTQLVGLLAIA
LLSGAATAAVGPIAFVGLMTPHLARWLLGNDHRWMLPGTLVITPCLLLAADILGRLLVPGELRVSIVTAILGAPMLIVLV
RRKLGRGQI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 4e-17 43
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 4e-17 43
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 4e-17 43
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 4e-17 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepD YP_003933227.1 ferric enterobactin transport system permease fepD VFG0926 Protein 1e-50 68