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Name : fimD (Pvag_3600) Accession : YP_003933168.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Virulence Product : outer membrane usher protein fimD precursor Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3827965 - 3830451 bp Length : 2487 bp Strand : - Note : P pilus assembly protein, porin PapC DNA sequence : ATGCGGTATACCGCAGCCGCGGAAAGCGATTTGCACTTTAACCCCGCCTTCCTTAATGGCGAGAGCGCGTCAATGGCTGA TTTATCCTGGGTAAATACAGGCAGTGCCTTACCACCAGGCGAATATAATATTAACGTCTATATCAATAAGAACTATGCCT TCACTGGCAACGTCATTTTTGCTGTGGATAAATCAAATGGGCAGGATATAAACGCAGCGTGCCTGACGGCCAGTCAGTTT AATGCGCTCAGCGTTGACATGGCACAGGCACAGGGTGTCAGCCTGCCGCTGGTAAAGCAGTGCTATTTTCTCAACACGCT GTTTCCCGGCAGCAGCACGGATTATGAGCCGCGAACCCTCACGCTCAACATCACTTTACCGCAGAGCATGATGCGCAATC TGCCACGTGGCTACGTTAGTCCGGAAAGCTGGGAACATGGCATTCACGCCGGGTGGCTGAACTATGTTATTAACGGCTCA AATAACACCTACCGAGGGAATAATAAAACTCGCGAGCAGCAGCTGTTTGCCAGCCTGAACAGCGGCATAAACATTGGCGC ATGGCGGCTGCGTGACTATACCACCTGGACTAAAGACACCAATGAGCTGAAGCATGTACAGACCTGGCTACAGCACGATG TTCCGGCGCTGGGCGCACAGCTTTACGCTGGGGAAACGTACACGTCATCTCAGATATTTGATTCCATAGGTGTACGCGGG CTGGCGCTTAAAACTGATGACAATATGCTGCCTGCCAGCCTGAACGGTTACGCGCCCGAAGTCAGGGGAATTGCGCGCAG TAATGCTGTCGTCACCGTTCGGCAGAACGGCAATGTTATTTATCAAACCAGTGTGTCGCCCGGGCCATTTGTGCTTAGCG ATCTCTATCCAACCTCTTCCGGTGGTGATCTGTCTGTCACTATAAGGGAGAACGATGGCTACGAAACCCAGTTCAGCGTG CCTTTCGCCAGCGTTCCTAATCTGGTTCGAAGCGGCCAGGCTAAATATGCCCTTAGTGCAGGAAAATTCCAGCCCGTTAA TAATCAGAATGCACCCACTTTTGCCCAGGGTGAACTCTTTTATGGCTGGCGGTATGGACTCACTTTTTATGGTGGCGCTC AGCTTTCCGAGCGTTATCGCGGAGTTGCAGCAGGCATCGGTCAGAACCTGGGCCGTTTTGGTGCCTATTCGCTGGATATT ACCCATGCCCAGAGCCAGCTTGCGGATGACAAACATTACACAGGTGATTCCATTCGCCTGCGCTACAGCAAACTGCTCAA TGACATCGGAACGCGCGTGAATTTCTACTCGCTACGCTACTCCACACAAGGGTTCTATAACCTCAGTGATACGGCTTATA AAAGGATGAGTGGCGGCAAGCCGGAACAAATAGTAGAAGCAGATGAAACTGTGACTACCCGCTATGAAAATCTCTATGAC CTCCGGATGTCACGCAAAGCCAGAAACCAGCTGCAGCTCACGCAGCCGATGGACAAATATGGCTCACTGTCACTGTCATG GGATCAGCAAACCTACTGGCATACTTCGAAAACGACTCAGGGAATCCAGTTTGCCTGGAATACGACATTGCGATCGGCCT CGCTGGGGGTGAGCTTCCAGCGCAGTACCAGTCTGTATGATGACAGTAAAGATAACATTCTGGCGTTATCGCTCTCGATA CCCTTCGGCAATCCTAAAAATTCGACACGGGCACGTTTCTCCACCACTCAGGGGAAATCAGCAGGAACGACCTACAGCGG TGGCGTCAGTGGTTATGTACCTGGACAGGATGAGCTTTATTACAGCGTCAATCAGCGCTACAGCGCCCGGCAAGCGTATG GCGGCGATACTGCACTGCAATACAAAAATCAGCGGGGCCAGTACAACCTGGGTTACAGCTACGGGCGTGATGCTCGCAAT CTCAGCTACGGCATAAGCGGTGGTGCTGTTTTACACGAAGATGGTCTGACGCTGAGCCAGCCTCTGGGCAATACCAATAT TCTGATCAAAGCACCGGGAGCCAGCGAGGTTGCGGTTCTGAATCATAGAAGTATTAAAACCGACAGCCGGGGTTATGCGG TCATTCCTTACGCTACGCCTTATCGCATTAACCGGGTAGGACTGGACACCACGACCACGGGTAATGATGTTGAACCCGAT AACGCCATCATCAGCAAAACGCCTACCGACGGCGCACTGGTGCGAGCCACCATTGCCACTCAGCAGGGTGCAAAAGCGAT GATTGTCTTACGTCAGAACGGCACGGTATTGCCTTTTGGTACCGTCGTCGCACTGGAAGACAGCGAGGTTAGCAGCATTG TGGGTGATGGCGGCAGCGTCTATTTATCGGGCCTGCCAATGAAAGGCACACTTAACGCGGTCTGGGGCAAAGATAACATG GCACGCTGTTCTGTTCGCTTCCAGCTCAATAAGCAGGATTTCAATGCCCGCACGGGCCTCTATACACAGGAGGGAGTATG TCAGTAA Protein sequence : MRYTAAAESDLHFNPAFLNGESASMADLSWVNTGSALPPGEYNINVYINKNYAFTGNVIFAVDKSNGQDINAACLTASQF NALSVDMAQAQGVSLPLVKQCYFLNTLFPGSSTDYEPRTLTLNITLPQSMMRNLPRGYVSPESWEHGIHAGWLNYVINGS NNTYRGNNKTREQQLFASLNSGINIGAWRLRDYTTWTKDTNELKHVQTWLQHDVPALGAQLYAGETYTSSQIFDSIGVRG LALKTDDNMLPASLNGYAPEVRGIARSNAVVTVRQNGNVIYQTSVSPGPFVLSDLYPTSSGGDLSVTIRENDGYETQFSV PFASVPNLVRSGQAKYALSAGKFQPVNNQNAPTFAQGELFYGWRYGLTFYGGAQLSERYRGVAAGIGQNLGRFGAYSLDI THAQSQLADDKHYTGDSIRLRYSKLLNDIGTRVNFYSLRYSTQGFYNLSDTAYKRMSGGKPEQIVEADETVTTRYENLYD LRMSRKARNQLQLTQPMDKYGSLSLSWDQQTYWHTSKTTQGIQFAWNTTLRSASLGVSFQRSTSLYDDSKDNILALSLSI PFGNPKNSTRARFSTTQGKSAGTTYSGGVSGYVPGQDELYYSVNQRYSARQAYGGDTALQYKNQRGQYNLGYSYGRDARN LSYGISGGAVLHEDGLTLSQPLGNTNILIKAPGASEVAVLNHRSIKTDSRGYAVIPYATPYRINRVGLDTTTTGNDVEPD NAIISKTPTDGALVRATIATQQGAKAMIVLRQNGTVLPFGTVVALEDSEVSSIVGDGGSVYLSGLPMKGTLNAVWGKDNM ARCSVRFQLNKQDFNARTGLYTQEGVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-149 | 41 |
