Gene Information

Name : ygiX (Pvag_3246)
Accession : YP_003932833.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein qseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3426879 - 3427550 bp
Length : 672 bp
Strand : +
Note : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGTATTTTACTGATTGAAGACGATCGCTTAATTGGCGACGGTATCAAAGCGGGGCTGAGTAAACTGGGCTTCAGCGT
TGACTGGTTTACGTCTGGTGAGTCGGGCTGTAACGCGCTGGAGGCCGCGCCATGGGATGCGGTGATCCTGGACCTTTCTC
TGCCTGAGCGGGATGGACTCGATATCCTGCGGCAGTGGCGGCAGCAGGGAAATGATGTGCCGGTCCTGATACTGACTGCC
CGCGATGCGCTCGATCAGCGGGTTGAAGGCCTGCAGATGGGAGCCGATGACTATCTGTGCAAACCCTTTGCCTTAACCGA
AGTGGCCGCGCGCTTACAGGCGCTAATCCGCCGCCGTCATGGTCAACTGCAGCCCGAACTCCGTCACGGTAACGTGGTGC
TGATCCCCGGCAGCCATAGCGTCATGCGCGATGACGAAGCGATTGAGTTAAAAAGCCGTGAACTGGCGCTGCTGGAACTC
TTTATGCGCAACCCGGGCCGGGTGCTGACGCGCAGCCAGCTGGAAGAGAAGCTCTACAGCTGGGATGCCGATGTCTCCAG
CAACGCGGTAGAAGTGCATATCCATCATCTGCGTAAAAAGCTGGGCAGCGGGTTTATCCGCACGCTGCACGGCGTCGGTT
ATACCCTGGGAGCCGCTGAATGCGATCAATGA

Protein sequence : 
MRILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPERDGLDILRQWRQQGNDVPVLILTA
RDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRHGQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLEL
FMRNPGRVLTRSQLEEKLYSWDADVSSNAVEVHIHHLRKKLGSGFIRTLHGVGYTLGAAECDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-38 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003932833.1 transcriptional regulatory protein qseB BAC0487 Protein 4e-39 44
ygiX YP_003932833.1 transcriptional regulatory protein qseB BAC0083 Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_003932833.1 transcriptional regulatory protein qseB VFG0473 Protein 6e-41 44
ygiX YP_003932833.1 transcriptional regulatory protein qseB VFG1390 Protein 4e-34 42