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Name : ldcC (Pvag_0219) Accession : YP_003929888.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 247264 - 249414 bp Length : 2151 bp Strand : + Note : arginine/lysine/ornithine decarboxylases DNA sequence : TTGAATATTCTGGCGATCATGGGCGCGCACGGCGTGTTTTATAAAGATGAACCGTTACGCGAACTCGACGCGGCGTTAAA TCTGCAAGGCTTCCAGCTGCTTTACCCGAAAAACAGTGACGATCTGCTGAAGCTGATCGAACACAATCCGCGAATCAGCG GCGTGATTTTCGACTGGGACGCGCACAACAGTCCGGAACTGTGCGGCGAGATTAACCAGCTCAACGAATACCTGCCGCTG TATGCCTTTATCAATACCCACTCACAGATGGACATCAGCATCAATGAGATGCGCATGCCACTGCACTTTTTTGAATATGC GCTGAATGCCGCCGACGATATCGCGCTGCATATCCGGCAGTATACCGATGACTATCTTGACCACATTACCCCACCGCTGA CCAAAGCACTTTTCACCTATGTGAAAGAGGGCAAGTACACCTTCTGCACGCCGGGCCATATGGCGGGTACCGCATTTCAG AAAAGCCCGGTAGGCTGTTTGTTCTACGACTTCTTCGGGGCCAATACGCTGAAGTCGGACATCTCTATTTCAGTGACCGA GCTGGGTTCGCTGCTGGATCACACCGGCCCGCACCTTGAAGCGGAAGAGTACATCGCACGCACGTTTGGCGCCGAGCAGA GTTACATGGTGACCAATGGCACCTCGACCTCGAATAAAATTGTCGGCATGTATGCGGCACCGGCGGGCAGCACCGTATTG ATCGATCGCAACTGCCACAAGTCTCTCACTCATCTGCTGATGATGAGCGATCTGGTCCCCATCTGGCTGAAGCCGACCCG CAATGCGCTGGGGATTCTCGGCGGTATCCCGAAGCACGAGTTCACCCGCGAGAGCATTACGCAGAAGGTCGCGACCACCG ATCGCGCTACCTGGCCAGCGCATGCGGTGATCACCAACTCCACTTACGATGGGCTGCTCTACAACACCCAGTACATTAAA GAGACACTGGATGTGCCGTCGATTCATTTCGATTCGGCCTGGGTGCCATATACCAATTTCCATCCGATTTATGCCGGTAA AAGCGGCATGAGTGGCGATCGTATTCCGGGCAAGGTGGTATATGAGACGCAATCGACCCACAAACTGCTGGCGGCGTTCT CGCAGGCCTCCATGATTCACATTAAAGGCGACTACGACGAACAGACGTTTAACGAAGCCTACATGATGCACACCACCACC TCGCCCAATTACGCCATCGTCTCCTCAATTGAAACTGCCGCCGCCATGCTGCGCGGTAACCCCGGTAAGCGGTTAATCAA TCGCTCGGTGGAACGCGCCTTGCATTTCCGTCGGGAAATCCAGCGCCTGCGCGAAGAGTCTGACAGCTGGTTCTTCGATA TCTGGCAGCCGGAACAGATCGATGAAGCGCAATGCTGGGCGATCCAGCCCGGCGAAGAAGAGTGGCATGGATTTACGCAG GCCGATCGCGATCACATGTACCTCGATCCGATCAAAGTCACTATCCTGACGCCAGGCATGAGTGAGCTGGGTGAAATGGC GGAAGAGGGGATCCCGGCCGCGCTGGTGGCGAAGTTTCTCGATGAGCGCGGCATTGTAGTGGAGAAGACCGGCCCCTATA ACCTGCTATTCCTGTTCAGCATCGGCATCGACAAAACCAAAGCGATGAGCGTGCTGCGCGGTCTGACTGAGTTTAAACGC GCCTATGATCTCAATCTGCGCGTGAAAAACATGCTGCCGGATCTCTACGCTGAAGATCCCGACTTCTATCGCAATATGCG CATCCAGACGCTGGCGCAGGGGATCCATCAGCTGATCCGCCATCACGATCTGCCGCGTCTGATGCTGCAGGCGTTTGATG TCCTGCCCGAAATGAAGATGACGCCGCATCAGGCGTTTCAGCAGCAGGTGAAGGGCAACATCGAAACGGTGGACCTCAGC GAACTGGTCGGGCGGGTGTCGGCCAACATGATCCTGCCTTATCCGCCGGGCGTTCCTCTGGTAATGCCGGGCGAGATGAT TACCGAAAAGAGCCGTGCGGTGCTCGATTTTCTGCTGATGCTGTGTAGCATCGGCCGGCACTACCCGGGATTCGAAACCG ATATTCACGGTGCCAGCCTGACGGAAGAGGGCGAGTATCGCGTCCGCGTACTGAAAAACGACCTCGCGTAA Protein sequence : MNILAIMGAHGVFYKDEPLRELDAALNLQGFQLLYPKNSDDLLKLIEHNPRISGVIFDWDAHNSPELCGEINQLNEYLPL YAFINTHSQMDISINEMRMPLHFFEYALNAADDIALHIRQYTDDYLDHITPPLTKALFTYVKEGKYTFCTPGHMAGTAFQ KSPVGCLFYDFFGANTLKSDISISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTVL IDRNCHKSLTHLLMMSDLVPIWLKPTRNALGILGGIPKHEFTRESITQKVATTDRATWPAHAVITNSTYDGLLYNTQYIK ETLDVPSIHFDSAWVPYTNFHPIYAGKSGMSGDRIPGKVVYETQSTHKLLAAFSQASMIHIKGDYDEQTFNEAYMMHTTT SPNYAIVSSIETAAAMLRGNPGKRLINRSVERALHFRREIQRLREESDSWFFDIWQPEQIDEAQCWAIQPGEEEWHGFTQ ADRDHMYLDPIKVTILTPGMSELGEMAEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMSVLRGLTEFKR AYDLNLRVKNMLPDLYAEDPDFYRNMRIQTLAQGIHQLIRHHDLPRLMLQAFDVLPEMKMTPHQAFQQQVKGNIETVDLS ELVGRVSANMILPYPPGVPLVMPGEMITEKSRAVLDFLLMLCSIGRHYPGFETDIHGASLTEEGEYRVRVLKNDLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 72 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_003929888.1 | lysine decarboxylase | VFG1670 | Protein | 0.0 | 63 |
