Gene Information

Name : basR (Pvag_1735)
Accession : YP_003931372.1
Strain : Pantoea vagans C9-1
Genome accession: NC_014562
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein basR/pmrA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1817071 - 1817751 bp
Length : 681 bp
Strand : +
Note : Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAGATACTGATTGTTGAAGATGATGCGCTGCTGCTGCAGGGCCTGATGCTGGCGCTGGAAGGCGAAGGCTATGTCTG
CGATGGCGTGACGCGTGTGCGGGATGCTGAAGCGCATTTCGCCAGCGGTCTCTATAGTCTGGTGGTGCTGGATCTGGGTT
TGCCGGACGAAGATGGCCTGCATTTCCTGATACGACTGCGGCGGCAGAAAAAGATGACGCCGGTGCTGATACTGACCGCG
CGCGACACCATCAGCGAGCGCATTGCCGGACTCGATGCCGGGGCGGACGACTATCTGATCAAACCGTTTTCGCTGGATGA
GTTGCTGGCGCGGATCCGCGCGTTGATTCGCCGTCACGTCAATCAGGGCGACAGTCATGTCAGAGTGGGTGCGCTGGCAC
TGGATATGACCCATCGTCAGATCACCCTCAGCGATGTGCTGTTGGATCTGACACCCAAAGAGTTTGCGATTCTGTCACGA
CTGATGCTGAAGGCCGGCAATCCGGTTCACCGGGAAATTCTCTACCAGGACATCTATAACTGGGAGACCGAGCCTTCTAC
TAATACGCTGGAAGTGCATATCCATAATCTGCGCGACAAAATTGGCAAAAGCGCCATTCGTACCGTGCGCGGGTTTGGTT
ATGCGCTGGTGACGCAGGATGGCGTTCGCGAGGCCACATGA

Protein sequence : 
MKILIVEDDALLLQGLMLALEGEGYVCDGVTRVRDAEAHFASGLYSLVVLDLGLPDEDGLHFLIRLRRQKKMTPVLILTA
RDTISERIAGLDAGADDYLIKPFSLDELLARIRALIRRHVNQGDSHVRVGALALDMTHRQITLSDVLLDLTPKEFAILSR
LMLKAGNPVHREILYQDIYNWETEPSTNTLEVHIHNLRDKIGKSAIRTVRGFGYALVTQDGVREAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-23 44
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003931372.1 transcriptional regulatory protein basR/pmrA BAC0487 Protein 5e-51 60
basR YP_003931372.1 transcriptional regulatory protein basR/pmrA NC_002516.2.879194.p Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003931372.1 transcriptional regulatory protein basR/pmrA VFG0473 Protein 9e-61 71
basR YP_003931372.1 transcriptional regulatory protein basR/pmrA VFG1390 Protein 7e-18 42
basR YP_003931372.1 transcriptional regulatory protein basR/pmrA VFG0596 Protein 3e-22 41