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Name : topB (Pvag_1545) Accession : YP_003931182.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 1625501 - 1627417 bp Length : 1917 bp Strand : - Note : Topoisomerase IA DNA sequence : ATGCGTTTGTTTATTGCGGAAAAACCGAGCCTTGGGCGTGCTATCGCAGATGTGCTGCCGAAACCGCATCGCCGCGGTGA TGGCTTTATTGCCTGCGGCAACGATCAGATCGTCACCTGGTGCGTGGGACACCTTCTTGAGCAGGCGCAGCCCGACAGTT ATGACAGTCGTTACGCGCGCTGGTCGCTGAACGATCTGCCGATCATTCCGGAAAAATGGCAGCTGAAACCGCGTCCGTCG GTTGCGAAGCAGCTGAAAGTGGTGGAGGGTCTGCTGGCGCAGGCGAGTGAAGTGGTGCATGCCGGTGACCCGGATCGGGA AGGGCAGTTGCTGGTGGATGAGGTACTGGATTACCTGAACCTGCCCCCTGAAAAACGCAGTAAAGTGCAGCGCTGTCTGA TCAACGATCTTAACCCTCAGGCAGTGGATCGCGCCGTAAATCGCCTGCGTGAGAATCGCGAGTTTATCCCGCTGTGCGTT TCTGCGCTGGCCCGCGCCCGTGCGGACTGGCTCTACGGCATCAATATGACCCGCGCCTGGACGCTGCTGGGACGCAATGC CGGCTACGATGGTGTGCTGTCAGTAGGCCGGGTACAGACACCGGTGTTGGGGCTGGTAGTGCGGCGCGATGAAGAGATCG AGAACTTCGTGCCGAAAGACTACTTCGAAGTTAAAGCGCATATCCTCACGCCTGATGGTGCCAGATTTGTTGCCAGCTGG ATCCCCAGCGAAGCCTGTGAGCCGTGGCAGGATGAAGAGGGACGGCTGCTCAAACGCGCACTGGCCGATCATGTGGTGGC GCGTATCACCGGTCAGCCTGCCATCGTCACGGCCTACAGCGATAAGCGCGAAAATGACGTCGCTCCGTTGCCATTCTCCC TGTCCAGTCTGCAGATCGAGGCCGCGAAACGTTACGGACTGAGTGCCCAGACGGTCCTGGACACCTGTCAGCGGCTCTAT GAAACCCACAAACTGATTACCTACCCGCGTTCAGACAGCCGCTATCTGCCGGAAGAGCATTTTGCCGGTCGTCGTACGGT CTTGAAGGCGATACAGGCGCATCAGCCCCAGCTCACGCCACCAGCAGACTTTAACGCCGATCGCAGAAATCGCTGCTGGG ACGATAAAAAAGTCGATGCTCACCATGCCATTATTCCCACGGCCCGAAGCAGCGCGGTTAAGCTCAGTGAAAACGAACAG CACATTTATGAGCTGGTAGCGCGCCAGTATCTGATGCAGTTCTGCCCGGATGCGGTATTCCGTAAATGTGTCATCGATCT TGATATTGCGGGCGGAAAGTTTATGGCGAAAGCGCGCTTCCTCGCAGAGGCTGGCTGGCGTGCGCTGCTGGGCAGCAAAG AGCGGGATGAAGAGAACGACGGCATGCCGCTGCCGGTAGTGGCGAAAGGCGATGAGTTGCTGTGTGAGCGTGGCGAGGTG CTGGCGAAGCAGACTCAGCCGCCTCGACCGTTTACCGATGCCACCATTCTTTCTGCAATGACCGGCATCGCCCGTTTCGT TCAGGATAAAGAATTAAAGAAAGTGCTGCGTGCGACCGATGGTTTAGGAACGGAAGCCACACGCGCCGGCATTATCGAAT TACTGTTTCGTCGTGGCTTCCTGGTGAAGAAGGGCCGTTACATCAATTCCACGGATGCCGGACGCGCCCTGATTCACTCT CTGCCCGATCTGGCAGCGCGCCCGGATATGACGGCGCAGTGGGAATCGACACTGACGCGTATCAGCGAAAAGGCCTGCCG CTATGATGAGTTTATGCAGCCGCTGGTGCAGACCTTAACCGGCCTTATCCAGCAGGCGCGGCAGCAGCCTGCGGCGCATG CATTTCGGGGATTACCGTCCACCGGACAGAAACGTCCGGTGCGCAAAACCAGGCGTAAAGTGAAGGAGACGGAATGA Protein sequence : MRLFIAEKPSLGRAIADVLPKPHRRGDGFIACGNDQIVTWCVGHLLEQAQPDSYDSRYARWSLNDLPIIPEKWQLKPRPS VAKQLKVVEGLLAQASEVVHAGDPDREGQLLVDEVLDYLNLPPEKRSKVQRCLINDLNPQAVDRAVNRLRENREFIPLCV SALARARADWLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIENFVPKDYFEVKAHILTPDGARFVASW IPSEACEPWQDEEGRLLKRALADHVVARITGQPAIVTAYSDKRENDVAPLPFSLSSLQIEAAKRYGLSAQTVLDTCQRLY ETHKLITYPRSDSRYLPEEHFAGRRTVLKAIQAHQPQLTPPADFNADRRNRCWDDKKVDAHHAIIPTARSSAVKLSENEQ HIYELVARQYLMQFCPDAVFRKCVIDLDIAGGKFMAKARFLAEAGWRALLGSKERDEENDGMPLPVVAKGDELLCERGEV LAKQTQPPRPFTDATILSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELLFRRGFLVKKGRYINSTDAGRALIHS LPDLAARPDMTAQWESTLTRISEKACRYDEFMQPLVQTLTGLIQQARQQPAAHAFRGLPSTGQKRPVRKTRRKVKETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 9e-110 | 42 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-107 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-107 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-108 | 41 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 4e-105 | 41 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 2e-107 | 41 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 2e-101 | 41 |
