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Name : hofB (Pvag_0138) Accession : YP_003929807.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Virulence Product : protein transport protein hofB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 151962 - 153347 bp Length : 1386 bp Strand : - Note : Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB DNA sequence : ATGAGCAAGCCTGATGAGACGATTGCGGCATTATGCCAGCGCTATCGTGCTCTGGTTTTGCATCATGATGCCAGTCTGCT GCGCGTTGCCGTCGCGGAGAGCGTGCCGCCCGGACTGGCTGAAGCGCTCAACTTTGCCAGCCAGTGTCAGATTGAGATCG AATGCTGGCCACAGGCCCGGCTTGACCAGCTCCAGCACGCTGATAAACCGCTGGTAGCGCGCGAAGAGACACCTACCGAG TCAGCAATTGAAGCGACACAGCTTATCCTGCGTCAGGCACTGGAGCGACGAGCCTCCGATGTGCATATCGAACCCTGCCG CGAGGGTCTGCGTGTGCGACTGCGCATTGATGGCGTACTGCATCCGCTCTCTTCACTGCCTTCCACTCAGCCTGCGGCGT TGCTGGCACGACTGAAGATCCTTGGCGGGCTGGATATCGCCGAACGCCGCTTACCGCAGGATGGTCAGTTCAGCATGGAG ATTGCCGGTAAACCCGCCTCTTTCCGCCTGGCGACCTTGCCCATCTATGGCGGCGAGAAAGCAGTGGTCCGGCTGTTGCA GAGTGAAAGCGCGGCGCTGTCTCTGGATAAGCTCGGCTTACCCGCTGCCCAGTTGCGTCTGTTCTGTGCCGCACTGGCCC AGCCACAGGGACTGATCCTGGTCACCGGCCCCACCGGCAGTGGCAAGACGTTTACGCTTTATAGCGGACTCAGTGCCCTG AATAAACCGGAAAAAAATCTGTGCAGCGTTGAAGATCCTATTGAGATCCCACTGCCCGGCATTAACCAGACGCAGATTCA CACCAAAAACGGTCTCGATTTTAACCGTGTGCTGCGGGCGCTGCTGAGGCAGGATCCGGATGTGATCATGGTGGGCGAGA TCCGCGATGCCGAAACAGCGGAGATTGCGGTGAAAGCGGCGCAGACCGGGCATCTGGTGCTATCGACGCTGCACACCAAC TCCACCGCCGAAACGCTAACCCGGCTGCGGCAGATGGGGATTCCCGGTTATCTGCTGGGGTCAGCGCTGAAACTGATCGT TGCACAGCGTCTGGTCCGACGCCTCTGCCCCCATTGCCGTCAGCCCGCTGAGGCGGTGGCGCACTATCCTGCGGAACTCT GGCCCGGCACTCTGCAGACCTGGCGGGCCCCCGGCTGTGACCACTGCTTCTCCGGCTATTTTGGCCGGCTGGCGCTGTTT GAGCTGCTGCCGATCAATGCCAGGCTGCAGAATGCGATTGCAGCCGAGATGCCGCTGGAGAATCTGCTCAGTCTGGCCAA ACAGCAGGGATTGCGCACTTTACTGGTTTCCGGCCTGGAAGCGGTAAGCCGGGGCGATACCTCGCTGGAAGAGATGCAAC GGGTGATTGGGCTGGACGATGGCTAA Protein sequence : MSKPDETIAALCQRYRALVLHHDASLLRVAVAESVPPGLAEALNFASQCQIEIECWPQARLDQLQHADKPLVAREETPTE SAIEATQLILRQALERRASDVHIEPCREGLRVRLRIDGVLHPLSSLPSTQPAALLARLKILGGLDIAERRLPQDGQFSME IAGKPASFRLATLPIYGGEKAVVRLLQSESAALSLDKLGLPAAQLRLFCAALAQPQGLILVTGPTGSGKTFTLYSGLSAL NKPEKNLCSVEDPIEIPLPGINQTQIHTKNGLDFNRVLRALLRQDPDVIMVGEIRDAETAEIAVKAAQTGHLVLSTLHTN STAETLTRLRQMGIPGYLLGSALKLIVAQRLVRRLCPHCRQPAEAVAHYPAELWPGTLQTWRAPGCDHCFSGYFGRLALF ELLPINARLQNAIAAEMPLENLLSLAKQQGLRTLLVSGLEAVSRGDTSLEEMQRVIGLDDG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-70 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-70 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG2426 | Protein | 1e-80 | 49 |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG1880 | Protein | 4e-84 | 47 |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG2048 | Protein | 1e-71 | 45 |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG0182 | Protein | 6e-69 | 44 |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG0233 | Protein | 6e-73 | 44 |
| hofB | YP_003929807.1 | protein transport protein hofB | VFG1876 | Protein | 2e-72 | 43 |
