|
Name : clpV (Pvag_1042) Accession : YP_003930684.1 Strain : Pantoea vagans C9-1 Genome accession: NC_014562 Putative virulence/resistance : Virulence Product : type VI secretion system, core protein ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1095764 - 1098373 bp Length : 2610 bp Strand : + Note : ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGTCAGAAATCAGCCGTGCCGTGCTATTCGGCAAACTGGATACGCTGTTATTTACCTCGCTGGAAAGCGCCACCGCCTT TTGCAAACTGCGCGGCAATCCCTATGTTGAACTGGTGCACTGGCTGCATCAGCTGATGCAGCAGCAGGATGGCGACTTAC AGCAGGTCATCACACATTTTTCACTGGATGAAAAGGCCCTGACTCAGGACATCGTTGCCGCGCTGGATCGCCTGCCGCGC GGTGCCAGTGCGGTCTCCGACCTCTCTGAGCATATCGACAGCGCCGTGGAGCGGGCATGGGTTTACGCCTCGCTGAAATA TGGCGCGACCCGCATTCGCGGTGGCCATCTGCTGATCGGCATGCTGAAAACTTTCAACCTGGCCAGCGTACTGAAAGGCA TCTCCGGCCAGTTCAGTCGCGTCAACGCCGATGCGCTGCTGGAGCAGTTCGACACGCTGCTCAGCAACAGCAAAGAAGCG CAGCAGGCGCTGATCGCACCGGTGGATGCCGCTGGCGCACCGCCTGCGGCCAGCGGCAGCACGCTGGAGCAGTACGGGCA GGACCTGACTGCGCGCGCACGTAACGGCCGCATCGATCCGGTGACCGGCCGTGACGATGAGATCCGCCAGATGGTGGATA TTCTGATGCGTCGTCGTCAGAACAACCCGCTGCTGACCGGCGAAGCAGGTGTCGGCAAAACCGCGGTGGTCGAAGGTCTC GCGCTGCGTATCGCGGCGGGCGATGTGCCTGCGCCGCTGCGCGATGTGCAGCTCTGGCTGCTGGATATCGGCCTGCTGCA GGCGGGTGCCGGGATGAAAGGGGAGTTCGAAGCACGGCTGCAGGCGCTGATCAATGAGGTGCAGTCCAGCCCGACGCCGA TTGTGCTATTTGTGGATGAGATCCACACCCTGGTCGGCGCGGGAGGTCAGCAGGGCACCGGCGATGCCGCCAACCTGCTG AAACCGGCGCTGGCGCGCGGCCAGCTGCGCACCATCGGCGCGACTACCTGGGCCGAATATAAAAAGTACATCGAGAAAGA CCCGGCGCTGACCCGTCGCTTCCAGACCGTGCAGGTGCAGGAGCCGGATGAAGCCAAAGCGATTCTGATGCTGCGCAGCA CCGTCAGCGCGCTGGAGAAACACCACCGGGTGCTGCTGCTGGATGATGCGGTCAGTGCGGCGGTGAAACTGTCGCATCGC TACATTCCGGCGCGTCAGTTGCCGGACAAAGCGGTGGCGCTGCTGGATACCGCCTGCGCCCGCGTGGCGGTCAGTCAGGG CGCACAGCCTGCGGCGCTGGAGGATTGCCTGCACCGTCTGGCCGCGCTGGAGATTGAAGCGGAGATCATTGAACGCGAAA TTAAGGTCGGCCTCGGTGACGTCACCCGCCAGCAGGCGATTGCCGCAGAGCGCACTGCCCTGGAAGCTGAACGCGATGCG CTGCAACAGCGCTGGCTGCAGGAGCGCGAACTGGTCGAGACCCTGATTGCGCTGCGTGCCCGCTGTGTTACCGAAGAGGA TGCGGCGCTGCGTGAACAGCGTGATGCAACGCAGCAGCAACTCACTGCGCTGCAGGGCGACACGCCGCTACTGTTTGCCG CCGTCGATGCGGGCGTGGTAGCGGCCGTGGTGTCGGACTGGACCGGTATTCCGCTGGGCCGGATGGTGAAGAATGAGATC GACGCCGTCCTGAATCTGGCTGACACCCTGAACCAGCGCGTCATCGGTCAGCGTCACGGTCTGGAGCTGATCGCGAAGCG GGTTCGCACCACACGCGCGCGCCTCGATAACCCCAACAAACCCGCAGGCGTCTTTATGCTGTGCGGTCCGTCCGGTGTAG GGAAAACCGAGACCGCACTGGCGCTGGCCGAGTCACTGTATGGCGGTGAGCAGAATATCATTACCATCAACATGAGCGAG TTTCAGGAAGCGCACACCGTCTCGACGCTGAAAGGCGCACCGCCGGGCTACGTCGGTTACGGCGAGGGCGGCGTGCTGAC CGAAGCCGTTCGCCGTCGTCCCTATAGCGTGGTGCTGCTGGATGAGATTGAGAAAGCCCATCCGGATGTGCATGAGCTGT TCTTCCAGGTGTTCGACAAAGGCTGGATGGAGGATGGCGAAGGCCGCCACATCGATTTCCGCAACACCATCATTATTCTG ACCTCGAACGTCGGCACGCAGTTGATCAGCGCGATGTGCGCCGATCCTGAACTGATGCCGGATCCCGATGCCCTGAGTAC CGCACTGCGTAAGCCGCTGCTGGAGGTATTCCCGCCTGCGCTGCTGGGCCGTCTGCTGGTGGTGCCCTATTACCCGCTCA GCGATGACATGCTGGCGGAGATCGTGCGGCTGCAGCTGGCGCGCATTGTGCGCCGTCTGGCCGACAACCACGGCATTGAC GCGCAGATCGACGAGTCGGTGATCAGCCAGATCGTGCAGCGCTGCACCGAGGTGGAGTCGGGCGGTCGCATGGTCGATGC CATCCTCACCAACACGCTGTTGCCGCAGATGAGCCAGATACTGCTGAGCGCCCACGCCCGCGATGAACGCTATCGCCGCG TTGAGGTGCGTTGTGAGCAGGGCGAATTTGTCTGCCAGTTCGCTGTTTAA Protein sequence : MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVITHFSLDEKALTQDIVAALDRLPR GASAVSDLSEHIDSAVERAWVYASLKYGATRIRGGHLLIGMLKTFNLASVLKGISGQFSRVNADALLEQFDTLLSNSKEA QQALIAPVDAAGAPPAASGSTLEQYGQDLTARARNGRIDPVTGRDDEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGL ALRIAAGDVPAPLRDVQLWLLDIGLLQAGAGMKGEFEARLQALINEVQSSPTPIVLFVDEIHTLVGAGGQQGTGDAANLL KPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVQEPDEAKAILMLRSTVSALEKHHRVLLLDDAVSAAVKLSHR YIPARQLPDKAVALLDTACARVAVSQGAQPAALEDCLHRLAALEIEAEIIEREIKVGLGDVTRQQAIAAERTALEAERDA LQQRWLQERELVETLIALRARCVTEEDAALREQRDATQQQLTALQGDTPLLFAAVDAGVVAAVVSDWTGIPLGRMVKNEI DAVLNLADTLNQRVIGQRHGLELIAKRVRTTRARLDNPNKPAGVFMLCGPSGVGKTETALALAESLYGGEQNIITINMSE FQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHELFFQVFDKGWMEDGEGRHIDFRNTIIIL TSNVGTQLISAMCADPELMPDPDALSTALRKPLLEVFPPALLGRLLVVPYYPLSDDMLAEIVRLQLARIVRRLADNHGID AQIDESVISQIVQRCTEVESGGRMVDAILTNTLLPQMSQILLSAHARDERYRRVEVRCEQGEFVCQFAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 0.0 | 56 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-120 | 48 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-120 | 48 |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 7e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpV | YP_003930684.1 | type VI secretion system, core protein ATPase | VFG2076 | Protein | 0.0 | 60 |
| clpV | YP_003930684.1 | type VI secretion system, core protein ATPase | VFG2084 | Protein | 2e-138 | 44 |
