Gene Information

Name : HPSJM_02685 (HPSJM_02685)
Accession : YP_003928450.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag1)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 537308 - 537655 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTGACACAATCAATACAACTGAAGCAACCCATGAAACAAAAAAACCAAACGCTTTTGTAAATTTTTTCAAAAACAG
TTTGACTGACAAGCGTTATGATGCATTAGGTCTCATTGGAGCAGGGGTTTTATGTTGTGTCTTGAGCGGTGCTATGGGGA
TTGTTGGGATAATTTTTGTCGCAATAGGAATCTTTTTGTCTTTTTCTAATATCAACTTAGTGAAATTAGTTGAAAAATTG
TCCAAAAAACAACCTAAAGCGGCAACAACTGTCAATAACGAAACCCAAAAATCTCAAGCAACAAGCGTTACCAACGGACC
AACTGAAGCTAAAGAGAATAAAGATTGA

Protein sequence : 
MADTINTTEATHETKKPNAFVNFFKNSLTDKRYDALGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKL
SKKQPKAATTVNNETQKSQATSVTNGPTEAKENKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag1 ABQ45816.1 Cag pathogenicity island protein Virulence cag PAI Protein 7e-32 99
cag1 YP_003728746.1 cag pathogenicity island protein zeta Virulence cag PAI Protein 1e-31 98
HP0520 BAD14019.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-31 97
cag1 AAR03883.1 Cag1 Virulence cag PAI Protein 1e-31 97
cag1 AAR03943.1 Cag1 Virulence cag PAI Protein 5e-31 96
cag1 ABQ45815.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-31 96
HP0520 BAD13964.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-35 96
HP0520 BAD13992.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-35 96
cag1 AAR03853.1 Cag1 Virulence cag PAI Protein 1e-28 96
HP0520 BAD13800.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-35 95
orf6 NP_223187.1 cag island protein Not tested cag PAI Protein 1e-30 95
HP0520 BAD14046.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-35 95
HP0520 BAD13909.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-35 95
cag1 ABQ45820.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-35 95
cag1 ABQ45825.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-35 95
HP0520 BAD13773.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-34 94
cag1 ABQ45826.1 Cag pathogenicity island protein Virulence cag PAI Protein 4e-30 94
HP0520 BAD13882.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-34 94
cag-zeta AAF80191.1 Cag-zeta Virulence cag PAI Protein 2e-30 94
cag1 ABQ45822.1 Cag pathogenicity island protein Virulence cag PAI Protein 4e-35 94
cag1 ABQ45819.1 Cag pathogenicity island protein Virulence cag PAI Protein 1e-34 94
cag1 YP_005779069.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-34 94
HP0520 BAD13854.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-35 94
cag1 YP_005774548.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-35 94
HP0520 BAD13937.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-35 94
HP0520 BAD13827.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-35 94
cag1 YP_005777264.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-35 94
cag1 ABQ45824.1 Cag pathogenicity island protein Virulence cag PAI Protein 3e-35 94
cag1 ABQ45828.1 Cag pathogenicity island protein Virulence cag PAI Protein 9e-35 94
HP0520 NP_207317.1 cag pathogenicity island protein (cag1) Virulence cag PAI Protein 5e-35 94
cag1 ABQ45823.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-35 94
cag1 ABQ45827.1 Cag pathogenicity island protein Virulence cag PAI Protein 3e-35 94
cag1 ABQ45817.1 Cag pathogenicity island protein Virulence cag PAI Protein 6e-35 94
cag1 YP_005775724.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-35 94
cag1 ABQ45814.1 Cag pathogenicity island protein Virulence cag PAI Protein 3e-35 94
cag1 ABQ45821.1 Cag pathogenicity island protein Virulence cag PAI Protein 6e-35 94
cag1 AAR03912.1 Cag1 Virulence cag PAI Protein 6e-35 94
cag1 ABQ45818.1 Cag pathogenicity island protein Virulence cag PAI Protein 2e-34 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02685 YP_003928450.1 cag pathogenicity island protein (cag1) VFG0280 Protein 1e-35 94