Gene Information

Name : HPSJM_02680 (HPSJM_02680)
Accession : YP_003928449.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Epsilon
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 536850 - 537200 bp
Length : 351 bp
Strand : -
Note : COG0551 Zn-finger domain associated with topoisomerase type I

DNA sequence : 
ATGATACAAAGAGAATTGAATAGTGTCTCATTTTATGGTTGCTCTAATTATGTAAATAAAGGCGACCGTAAGGGCATTTT
ACGAGAAATAAATGGCTCAATGAAAATGGTCTGCTTGGCTAGTGTAAAAGCTAATGTTAAAGAAAATTCTTTTTTCTTAG
GGTGTAAAAAGTATCTTAAGTGCAAATGGACCGCTAGCGTGGATTCACAAGATCCTAAATATCCCAAATGCAATGGATTG
ATGAAAAGAAAAAAGAATTTCAAAAGCAATGAGTTTTTTACAGCTACATCACTTACCTTAAATGCAATGGAATTTTGTCT
CTATACCAATTCTGAAAAAAAAGGAAACTAA

Protein sequence : 
MIQRELNSVSFYGCSNYVNKGDRKGILREINGSMKMVCLASVKANVKENSFFLGCKKYLKCKWTASVDSQDPKYPKCNGL
MKRKKNFKSNEFFTATSLTLNAMEFCLYTNSEKKGN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp0521 AAR07063.1 cag 2 Virulence cag PAI Protein 1e-43 90
hp0521 AAR07065.1 cag 2 Virulence cag PAI Protein 4e-37 90
cag-epsilon AAF80192.1 Cag-epsilon Virulence cag PAI Protein 9e-40 89
hp0521 AAR07061.1 cag 2 Virulence cag PAI Protein 9e-40 89
hp0521 AAR07064.1 cag 2 Virulence cag PAI Protein 9e-36 89
hp0521 AAR07062.1 cag 2 Virulence cag PAI Protein 2e-38 88
hp0521 AAR07058.1 cag 2 Virulence cag PAI Protein 6e-42 88
hp0521 AAR07056.1 cag 2 Virulence cag PAI Protein 6e-42 88
hp0521 AAR07057.1 cag 2 Virulence cag PAI Protein 6e-42 88
hp0521 AAR07067.1 cag 2 Virulence cag PAI Protein 1e-40 86
hp0521 AAR07060.1 cag 2 Virulence cag PAI Protein 7e-41 86
hp0521 AAR07059.1 cag 2 Virulence cag PAI Protein 7e-41 86
hp0521 AAR07066.1 cag 2 Virulence cag PAI Protein 1e-36 80