Gene Information

Name : HPSJM_02675 (HPSJM_02675)
Accession : YP_003928448.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein 3
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 535405 - 536850 bp
Length : 1446 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCGCTGTATTACTCATGGGCTTACTAATCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGTCTCTGTTGATGACACAAAAACTCAAGCGCTTTTTGATATA
TACGACACCTTGAACGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACTTATCTCTA
CGCTATGGATCTATTGGATTATAACAACTACTTATCCATAGAAAACCCTATTATCAAAACAAGAGCGATGGGGACTTATG
CGGATCTCATTATCATCACAGGTTCGTTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGAAAC
GCTAAGTTTGTGTTAAAAATCAATGAGAACATGCCTTATGCCCAAGCGACTTTTTTACGAGTACCAAAAAGAAGCGATCC
TAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAACAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT
ACGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTCGCTATGCCCACTAGC
GATAGCGTTAAACAAAAACCCAATATCATTGCTCCTTATAGCTTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGC
CCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGTTGAATTGGCTAAATAC
AAGCTCAAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG
AGTAGTGGAAGTGCCTATTTCCCCTAAAACAGGTAATTCTGATGAAACAATGAGAGTTGTCAAAGAAAAAGAAAACTATA
ATGGATTGTTAGTGGATAAAGAGACCACGATCAAAAGAAGCTATGAGGGGACTTTGATCAGCGAAAATTCTTACAGCAAA
AAAACACCTCTCAACCCTAATGACTTGAGGAGCTTAGAAGAAGAAATCAAAAGCTATTATATCAAGTCTAACGGCTTGTG
TTATGCTAATGGCATCAGTCTTTATGTAAAAATCAAAAACGACCCCTATAAAGAGGGAATGTTGTGTGGTTATGAGAGCG
TTCAAACTTTACTTTTGCCATTAAAGGACAAGCTCAAATACGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATAVLLMGLLISNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYVSVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENMPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTS
DSVKQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEVELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPKTGNSDETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSK
KTPLNPNDLRSLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESVQTLLLPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 2e-167 98
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-168 98
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-168 98
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 2e-168 98
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-165 98
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-165 98
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-167 97
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 4e-167 97
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-167 97
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 7e-167 97
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-167 97
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-167 97
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-167 97
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-167 97
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 2e-167 97
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 3e-167 97
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-167 97
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-166 97
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-167 97
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 97
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-167 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 3e-165 97
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 3e-167 97
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 2e-163 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02675 YP_003928448.1 cag pathogenicity island protein 3 VFG0282 Protein 7e-168 97