Gene Information

Name : HPSJM_02670 (HPSJM_02670)
Accession : YP_003928447.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Gamma
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 534886 - 535395 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
TTGTTTGGGAAATGGATTGGTCTGACTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATCAGTTTCAA
GCAATACGAAAATCTTATCCATATCCATCAAAAAGGCTGCGACAACGAAATAATGTGCAGAACGCTCATTTCTATCGCTT
TATTAGAAAGTTCTCTAGGGTTGAACAACAAGCGTGAAATTTCCCTAAAAGACACTTCTTATTCCATGTTTCACATCACC
TTAAACACCGCTAAAAAATTCTATCCTACCTATTCTAAAACGCTCCTCAAGTTCAAATTGCTCAATGATATGGGTTTTGC
GATCCAATTAGCCAAACAAATTTTAAAAGAAAATTTTGACTACTACAAACAGAAATATCCTAACAAAAGCGTGTATCAAT
TAGTAGAAATGGCAATAGGCGCTTACAATGGGGGAATGAAACACGATCCTAATGGTGCTTATGTGAAAAAATTCCGTTGC
ATTTATTCTCAAGTGCGATATAACGAGTAG

Protein sequence : 
MFGKWIGLTLLLNSLAYPCQKVTISFKQYENLIHIHQKGCDNEIMCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKFKLLNDMGFAIQLAKQILKENFDYYKQKYPNKSVYQLVEMAIGAYNGGMKHDPNGAYVKKFRC
IYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 99
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 9e-74 97
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 4e-73 96
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 96
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 4e-73 95
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 3e-73 95
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 4e-73 95
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-54 95
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 1e-72 94
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 1e-71 93
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-72 93
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 2e-66 93
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-72 93
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 5e-71 93
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 4e-71 93
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-71 93
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 2e-71 93
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-71 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-71 93
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 9e-66 92
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-70 92
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-70 92
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-69 90
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 2e-69 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02670 YP_003928447.1 cag pathogenicity island protein Gamma VFG0283 Protein 1e-73 96