Gene Information

Name : HPSJM_02635 (HPSJM_02635)
Accession : YP_003928440.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein V
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3736
EC number : -
Position : 521298 - 522056 bp
Length : 759 bp
Strand : +
Note : COG3736 Type IV secretory pathway, component VirB8

DNA sequence : 
ATGTTAGGGAAAAAAAACGAAGAAGTCTTGATTGATGAAAATTTGGTTGGGGGTGTGATAGCCCTTGATAGATTGGCAAA
ACTCAATAAGGCCAATAGGACTTTCAAAAGGGCTTTTTATCTCTCTATGGCACTCAATGTCGCCGCTGTAACGAGTATTG
TGATGATGATGCCTTTGAAGAAAACGGATATATTTGTTTATGGCATTGATCGATATACAGGAGAATTTAAAATTGTCAAA
CGCTCCGATGCTAGGCAAATTGTCAATTCTGAAGCTGTTGTGGATAGTGCAACTTCAAAATTTGTTTCATTGCTGTTTGG
TTATAGTAAAAATTCTTTGAGGGATCGCAAGGATCAACTGATGCAATATTGCGATGTGAGTTTCCAAACCCAAGCAATGA
GAATGTTCAATGAAAATATCAGACAATTCGTGGATAAAGTCCGAGCAGAAGCTATCATTAGCTCTAACATACAAAGAGAA
AAAGTCAAAAATAGTCCCTTAACGAGATTAACATTTTTTATTACCATCAAAATCACACCGGATACAATGGAAAATTATGA
ATATATTACTAAAAAACAAGTAACTATTTATTATGATTTTGCTAGAGGTAACTCTTCTCAAGAAAATCTTATCATCAATC
CTTTTGGCTTCAAAGTGTTTGACATTCAAATCACGGATTTACAAAACGAACAGACAGTAAGCGAAATTTTGAGAAAGATT
AAAGAAGTGGAATCAAAAAATAAGGCATTAAATAAGTAA

Protein sequence : 
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNVAAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVK
RSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQRE
KVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKI
KEVESKNKALNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag10 AAR03865.1 Cag10 Virulence cag PAI Protein 6e-114 100
cag10 AAR03923.1 Cag10 Virulence cag PAI Protein 6e-114 100
HP0530 BAD14001.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
cagV YP_005779060.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD14055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
cag10 AAR03893.1 Cag10 Virulence cag PAI Protein 3e-113 99
cagV YP_005774539.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD13918.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
cagV AGC69797.1 cag pathogenicity island protein V Virulence cag PAI Protein 3e-113 99
cagV YP_005777274.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD13836.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
HP0530 BAD13891.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
orf17 NP_223197.1 cag island protein Virulence cag PAI Protein 1e-113 99
HP0530 BAD14029.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-114 99
HP0530 BAD13863.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 NP_207326.1 cag pathogenicity island protein (cag10) Virulence cag PAI Protein 1e-113 99
cag10 AAR03954.1 Cag10 Virulence cag PAI Protein 2e-113 99
HP0530 BAD13973.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0530 BAD13782.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0530 BAD13946.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 99
cagV YP_003728734.1 cag pathogenicity island protein V Virulence cag PAI Protein 3e-113 99
cag-V AAF80201.1 Cag-V Virulence cag PAI Protein 3e-113 99
cagV YP_005775733.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 99
HP0530 BAD13809.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02635 YP_003928440.1 cag pathogenicity island protein V VFG0290 Protein 6e-114 99