Gene Information

Name : HPSJM_02630 (HPSJM_02630)
Accession : YP_003928439.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 520261 - 520917 bp
Length : 657 bp
Strand : -
Note : -

DNA sequence : 
ATGAACGATACAACAGAGCATCATGGACCTAATCCGCTAAACACCCCACCACCTAGCAACTCACAGAGCAATGATCTTTT
AAATTTGCTAGACTCATTATATCCTAAAGGGAGTTTAGGGGAGCAAAGATTTCACGAAGCTCTAAAGAATCAAGAAGAGT
TGAAAAATATCCTGATAGAAATAGAAAAGCTACCACAAGAAAAAAGGTATGAACTTCTGATGCAGATAGGACAAGCCAAA
CAAAGAATAATGGAAGCATACGCTCATTCATTCTTAGGGTATATAGGGGGACTAGAGCATCTGTTAGGATTATGTATGGG
TGGGATATTTGTTTTGTTTGCAGTCTATTTTGTATTTTTAAGAACTAGCAAAAACACAGAGCTAGTGGAAAGTCTAAAAA
CAAAACTAAAACTCCAGTATTTTTACTATGCCTTTGGTGTGGGTGCGGTTTTGTTTTTTGGATTAGAAACAATTAGATCG
ATTTATGAACTATATATCTTAGGAATTGGTAGCACTAACGATAAGGTGCTTTTTGTTTTGAAAAACATTTGCTTCATAGG
TATGGGCTATTTGATCTATAAAGTTATTAAGGTTATTGGTATAAAAAATTTTATCAATGGTCTTTTCGCTTCAAAGAAAC
AAGGCGGTGCAGAATGA

Protein sequence : 
MNDTTEHHGPNPLNTPPPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGLEHLLGLCMGGIFVLFAVYFVFLRTSKNTELVESLKTKLKLQYFYYAFGVGAVLFFGLETIRS
IYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFASKKQGGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 3e-78 99
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 1e-77 99
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 98
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 4e-76 98
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 3e-76 98
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 97
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 2e-76 97
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 97
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-75 96
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 96
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-76 96
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 96
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 96
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 96
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 1e-76 96
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 3e-76 96
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 9e-76 96
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 4e-76 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02630 YP_003928439.1 cag island protein VFG0291 Protein 3e-78 99