Gene Information

Name : HPSJM_02620 (HPSJM_02620)
Accession : YP_003928437.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : CAG pathogenicity island protein 13
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 518582 - 519181 bp
Length : 600 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTAATAACATGCGAAAACTATTCTTAATGATTGCCAACTCAAAAGATAAGAAAGAAAAACTTATTAAGAGCTTGCA
AGAGAACGAACTTTTAGGCACTGACGAAAAAAAGAAAATCATGGATCAAATAAAAACCATGCATGATTTTTTCAAACAGA
TGCATACAAATAAGGGAGCATTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGTGCTGTTATCAAAAGCATTGGT
ATTGATAAATTTAAAAAGGTTTATCGTTTGCTTGAGAATGAGACTATGGAACTGTTGCATGCGATTACGGAGAATCCTAA
TTTCTTATTCTCCAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGCAAGCCCATCATGTTTAAGATGA
GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGATACTAAGCTCCCACTATTGAAATTGTTTGTGATGACAGATGAA
GAAGTGAATTTCTATGCTAATCTAAAAACCATTGAACAATATAACGACTATGTTAGGGATTTGCTGATGAAATTTGATCT
TGAAAAATACATGGAAGAAAAAGGAGTGCAAAACGCTTGA

Protein sequence : 
MSNNMRKLFLMIANSKDKKEKLIKSLQENELLGTDEKKKIMDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
IDKFKKVYRLLENETMELLHAITENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYDTKLPLLKLFVMTDE
EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKGVQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0534 BAD13922.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-86 97
HP0534 BAD13786.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 96
HP0534 BAD13895.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 96
cagS NP_223200.1 cag island protein Virulence cag PAI Protein 3e-85 96
cagS YP_005779057.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 96
cagS YP_005774536.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 96
HP0534 BAD14005.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-85 95
HP0534 NP_207330.1 cag pathogenicity island protein (cag13) Virulence cag PAI Protein 7e-84 95
HP0534 BAD13840.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-85 95
cagS AAF80204.1 CagS Virulence cag PAI Protein 1e-85 95
cagS YP_005777277.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-84 95
cagS YP_003728731.1 cag pathogenicity island protein S Virulence cag PAI Protein 4e-85 95
HP0534 BAD13813.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-84 95
HP0534 BAD14032.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-85 95
cag13 AAR03868.1 Cag13 Virulence cag PAI Protein 3e-85 95
HP0534 BAD14059.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-85 95
HP0534 BAD13867.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-84 94
cagS YP_005775736.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-84 94
cag13 AAR03957.1 Cag13 Virulence cag PAI Protein 2e-84 94
cag13 AAR03896.1 Cag13 Virulence cag PAI Protein 2e-84 94
HP0534 BAD13950.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-85 94
HP0534 BAD13977.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-84 94
cag13 AAR03926.1 Cag13 Virulence cag PAI Protein 4e-84 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02620 YP_003928437.1 CAG pathogenicity island protein 13 VFG0293 Protein 2e-84 95