Gene Information

Name : HPSJM_02615 (HPSJM_02615)
Accession : YP_003928436.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Q
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 517762 - 518142 bp
Length : 381 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTCCTACTAAAACACGCATTAGAGATCCGAACAAGCAAGAACTTACACAACCAAAAATAAAAGGACTGATCATGGG
AAAAATTTTAGCTTCTTTGTTGGGTGGCGGAACAAATCTTTTTACAGGTTTATCCAGTGATTTGTTTTCTATGATATTAA
ATTTTTTGTTCTTTCTGATGTTAATGATGGGACTTAATGAAGCATTAGGGAAAAAATTTAACTTGCCTATGGACAATATC
AAGAATTTTATGGCAGAAGTGCTGAAGAATGGATTCGATAGTATCAAAAACATGGGATCTGCTTTGGTTGGTAATGGTTT
TGGTAGCAGCAAATCAGACAAAACCGCTAATAAAATGAGTGTCTCTCAAGTAAGACTCTAG

Protein sequence : 
MLPTKTRIRDPNKQELTQPKIKGLIMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEALGKKFNLPMDNI
KNFMAEVLKNGFDSIKNMGSALVGNGFGSSKSDKTANKMSVSQVRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0535 BAD14033.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-32 100
cagQ AAC44691.1 CagQ Virulence cag PAI Protein 4e-32 100
cag14 AAR03897.1 Cag14 Virulence cag PAI Protein 4e-32 100
cag14 AAR03958.1 Cag14 Virulence cag PAI Protein 4e-32 100
HP0535 BAD13868.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-31 99
cag14 AAR03869.1 Cag14 Virulence cag PAI Protein 1e-31 99
cagQ NP_223201.1 cag island protein Virulence cag PAI Protein 6e-31 98
HP0535 NP_207331.1 cag pathogenicity island protein (cag14) Virulence cag PAI Protein 2e-31 98
cag14 AAR03927.1 Cag14 Virulence cag PAI Protein 3e-31 97
cagQ YP_003728730.1 cag pathogenicity island protein Q Virulence cag PAI Protein 8e-30 96
HP0535 BAD13951.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-27 87

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02615 YP_003928436.1 cag pathogenicity island protein Q VFG0294 Protein 5e-32 98