Gene Information

Name : HPSJM_02605 (HPSJM_02605)
Accession : YP_003928434.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 514495 - 515415 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAATTAGGTTCTGTCGCTCTTTATTCTTTGGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAGAATTGGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGACATGACG
ACAAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGGAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGACTAAGCACAGAGG
ATTGCAAGAATTAAACGAAATTAACGCTAACCCTTTGAATGACAACCCTAATGGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAATCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGAATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAGAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGCAC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGTATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKATKHRGLQELNEINANPLNDNPNGNSSTETKSNKDDNFDEMINKVNESFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGTTDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 1e-122 99
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-122 98
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-122 98
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-120 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 96
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-119 96
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-120 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 7e-116 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 3e-118 96
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-120 96
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-119 96
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 2e-119 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 95
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 95
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-115 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-117 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 94
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 94
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 94
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 94
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 94
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02605 YP_003928434.1 cag island protein VFG0297 Protein 6e-121 96