Gene Information

Name : HPSJM_02595 (HPSJM_02595)
Accession : YP_003928432.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein I
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 512558 - 513703 bp
Length : 1146 bp
Strand : +
Note : -

DNA sequence : 
GTGAAATGTTTTTTAAGCATATTTTCTTTCTTGACTTTTTGTGGTTTGTCTCTGAATGGTGCAGAAGTAGTAATAACGCT
TGAACCTGCCTTAAAAGCCATTCAGGCGGACGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAGG
CTCAATCTAGTGCCAAAGAAAAAGCCATTCAAGCACAAATAGAGGGAGAATTGAGAACCCAGCTTGCAACCATGAGCGCT
ATGTTAAAAGGGGCTAATGGCGTTATTAATGGTGTCAATGGCATGACAGGGGGGTTTTTTGCAGGTTCAGACATCTTGCT
TGGCGTCATGGAAGGGTATTCAAGCGCGCTTAGTGCATTGGGGGGGAATGTCAAAATGATCGTGGAAAAACAAAAAATTA
ATACCCAAACAGAAATCCAAAACATGCAAATCGCACTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGAACCAGCAA
AACGCTCTCTTAGAAGCGTTAAAAAACAGCTTTGAGCCGAGCGTTACTCTAAAAACACAAATGGAAATGCTTTCTCAAGC
TTTAGGAAGTTCTTCTGATAACGCTAAATACATCGCTTACAATACGATCGGCATCAAGGCGTTTGAAGAAACCTTAGAAG
GTTTTGAAACATGGTTGAAAACAGCTATGCAAAAAGCGACCCTTATTGATTATAATTCCCTAACAGGTCAGGCTTTGTTT
CAAAGCGCCATCTACGCGCCTGCTCTTAGTTTTTTTTCAAGCATGGGCGCACCATTTGGAATCATTGAAACATTCACTCT
AGTGCCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAATTACAGAA
TGATTGTAGCCCTTATTCAAAATAAACTGAGTGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGGAGAA
ATCAAAACCTTAAAAGGATCAGTAGATTTGAACGCGTTCATAGAAGCTGCTATCTTAAACGCAGAAAATCATTTAAACTA
TATAGAGAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAGAAACATTG
CTGGCTCTAAAGTTATTGTCAAATGA

Protein sequence : 
MKCFLSIFSFLTFCGLSLNGAEVVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSA
MLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQ
NALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKTAMQKATLIDYNSLTGQALF
QSAIYAPALSFFSSMGAPFGIIETFTLVPTKCPYLDGLKISACLMEQVIQNYRMIVALIQNKLSDADFQNIAYLNGINGE
IKTLKGSVDLNAFIEAAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIAGSKVIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag19 AAR03963.1 Cag19 Virulence cag PAI Protein 2e-159 99
cagI YP_003728724.1 cag pathogenicity island protein I Virulence cag PAI Protein 5e-159 99
HP0540 BAD13928.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-157 98
cag19 AAR03902.1 Cag19 Virulence cag PAI Protein 5e-158 98
cag19 AAR03874.1 Cag19 Virulence cag PAI Protein 1e-158 98
HP0540 BAD13873.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-159 98
cagI NP_223206.1 cag island protein Virulence cag PAI Protein 9e-158 98
cagI AGC69802.1 cag pathogenicity island protein I Virulence cag PAI Protein 9e-159 98
cagI YP_005775740.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-158 98
HP0540 BAD14038.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-159 98
HP0540 NP_207336.1 cag pathogenicity island protein (cag19) Virulence cag PAI Protein 7e-159 98
cagI AAF80208.1 CagI Virulence cag PAI Protein 5e-159 98
cag19 AAR03932.1 Cag19 Virulence cag PAI Protein 6e-158 97
HP0540 BAD13983.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-154 97
HP0540 BAD13956.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-156 97
cagI YP_005774531.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-147 95
cagI YP_005777281.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-153 95
HP0540 BAD13819.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-153 95
cagI YP_005779053.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-153 95
HP0540 BAD13846.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-154 95
HP0540 BAD13792.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-154 95
HP0540 BAD14065.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-152 94
HP0540 BAD14011.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-153 94
HP0540 BAD13901.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-153 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02595 YP_003928432.1 cag pathogenicity island protein I VFG0299 Protein 3e-159 98