Gene Information

Name : HPSJM_02590 (HPSJM_02590)
Accession : YP_003928431.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 511615 - 512547 bp
Length : 933 bp
Strand : +
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGACCCAATACAATCAAAGCATCGCTGAAGCTGTAAGCGTGCCTATGAAAGCTGCTAACCAACAATACAACCAATTGTA
TCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATTAACAGGGGAATTTAACGCGC
AAGGCAACACGCAAGGCGCGCAAATTGGTGCTGTTAATAGTCAGATTGCGAGCATTTTAGCGAGTAACACTACCCCTAAA
AATCCTAGCGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGCGTGCCAACAACGGTTGAAATGATAAGTGG
TATCTTAGGCAATATTACAAGTGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACTGCGTTCTCAAGCAAGCAACA
GCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTGGCTCATCAAAAGTGTTTTTT
AGTTGCATGCAAATTTCTATGACGCCCATGAGTGTTTCTATGCCCACTGTTTATGCCAAATACCAAGCGTTAGCCACTAA
TGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGTTCTTGCTGTTTATTGCTATG
CTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCAATTTGTTGCAGAACGCTTCT
CAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAGTTCGCTATATAA
TTACAATATAGTAGCGAATAAATCTTTTTTAAAATCGCATTTGACTTACCTTGATTACATCAAAGACAAGCTTAAGGGGC
AAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPK
NPSAIEAYATNQIAVPSVPTTVEMISGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFF
SCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNAS
QMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 3e-138 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 9e-139 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-139 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 2e-137 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 8e-139 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 3e-139 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-137 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-138 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 4e-137 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 2e-138 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 1e-137 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 2e-138 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 9e-138 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-138 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 5e-138 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-137 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-136 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 7e-137 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-136 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-136 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-136 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-137 98
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-136 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02590 YP_003928431.1 cag pathogenicity island protein H VFG0300 Protein 3e-137 98