Gene Information

Name : HPSJM_02565 (HPSJM_02565)
Accession : YP_003928426.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 506517 - 507167 bp
Length : 651 bp
Strand : +
Note : -

DNA sequence : 
TTGGCGAAAGTGGAGGAGCTAGCTAAATTGATCAATAATAATAGTAATAAAAAACTGAGAGGCTTTTTTTTGAAAGTTCT
CTTAAGTCTCGTTGTTTTCAGTTTGTATGGGTTAGCAAATGATGATAATCAAGCCAAAAAAGAAGCGCTAGAAAAAGAAA
AAAACACTCCCAATGGGCTTGTTTATACGAATTTAGATTTTGATAGTTTCAAAGCGACTATCAAAAATTTGAAAGACAAG
AAAGTAACTTTCAAAGAAGTCAATCCCGATATTATCAAAGATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAA
AAAAATAAAGGATTTGAAGCATTACGATCCCATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGACTGAATG
TAGAATTACAGATCAATCCTGAAGTGAAAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTT
CTGTCATTGCGCGGGGAAACAAGAGAAATTTTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTA
TGACCCTAATGATCTTTTGAAACACATTAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGG
TATATCTATAA

Protein sequence : 
MAKVEELAKLINNNSNKKLRGFFLKVLLSLVVFSLYGLANDDNQAKKEALEKEKNTPNGLVYTNLDFDSFKATIKNLKDK
KVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCF
LSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 2e-79 99
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 4e-80 98
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-81 98
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 4e-81 98
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-79 98
cagD AAF80210.1 CagD Virulence cag PAI Protein 4e-78 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 7e-80 97
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-80 97
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 1e-80 97
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 2e-79 97
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 2e-77 97
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-78 96
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-78 96
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-78 96
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-79 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-79 96
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-78 95
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-77 95
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-78 95
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 95
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 94
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 93
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02565 YP_003928426.1 cag pathogenicity island protein D VFG0304 Protein 4e-81 97