Gene Information

Name : HPSJM_02560 (HPSJM_02560)
Accession : YP_003928425.1
Strain : Helicobacter pylori SJM180
Genome accession: NC_014560
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 506195 - 506542 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTTTTTACAAGAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGTGGTAACAACCAATCCTTT
AATGGCGGTCACCAGTCCTGCAACAGGCGTCACTGAGACTAAAACTTTGGTTATTCAGATCATTTCTGTTCTAGCGATCG
TAGGTGGTTGTGCTTTAGGGGTCAAAGGCATAGCGGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAAGCGACT
GTTTTTGCTTACGCGCAGCCCATAGCTATGTTAGCGGTGGCAGGTGGTATTATCTATTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAAAGTGGAGGAGCTAGCTAA

Protein sequence : 
MKFFTRITDSYKKVVVTLGLVVTTNPLMAVTSPATGVTETKTLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-41 99
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 6e-42 99
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 8e-41 99
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 99
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 5e-41 99
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 8e-41 99
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 5e-41 99
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-41 98
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 97
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 97
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 97
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-41 97
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 1e-41 97
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 3e-35 97
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 96
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-41 96
cag25 AAR03969.1 Cag25 Virulence cag PAI Protein 8e-40 96
cagC AAC44704.1 CagC Virulence cag PAI Protein 1e-39 95
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-41 94
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-39 94
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-41 94
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-39 93
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-39 93
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-40 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSJM_02560 YP_003928425.1 cag pathogenicity island protein C VFG0305 Protein 2e-41 99