|
Name : HPSJM_01905 (HPSJM_01905) Accession : YP_003928294.1 Strain : Helicobacter pylori SJM180 Genome accession: NC_014560 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : 2.2.1.1 Position : 372791 - 374716 bp Length : 1926 bp Strand : - Note : COG0021 Transketolase DNA sequence : ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAATGCACTTCGCTTTTTGTGTGCAGACATGATAGA TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCTGATGTGATGGTGGTTTTAAGCTTGCACCTAAACCTTA ACCCCACCAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGTTTAGAAGATTTAAAGCATTTCAGGCAATTACACTCTAAAACCCCAGGACACCC TGAATTGCACCACACCGAAGGCATTGAGATTACGACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA TGGCGAGCCAATACGCTCAAACCCTTTTAGATAAACAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGAGAT TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTGAACAATCTCATTGTGATTTATGATAG TAATCAGATAAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTTAAAACGCGGTTTTTAGCACAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTAATGACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTAGTGAAAGCTTTATCATTAGCCCAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGCTTAGAAGCCTTATGGGAAAAGTCCTTAAGCCCTAAAACAAAAGAA AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCCATTACCCCACCTTTAAAAAAGGCGAATCTCTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCCAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCCT CTAATAACACGCATTTGAAACACTCTGGCGATTTCCCTTTAGGACAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT AATGCCCAGCATGCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGGGCG AAGACGGGGCGACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCTAATTTTTACGCTTTCAGGCCAAGC GATGCCTTTGAAAATACGGCTTGCATGCAAATAGCGTTAAGTTTGAACGCTCCTAGCGCTCTTATTTTATCGCGCCAGAA TTTGCCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCACTCTAAAGATCCCATTA TCACGCTCGTTGCGAGCGGGAGCGAAGTGTCTTTAGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGCGTGCCTTGTTTTGATTTGTTGATAGAGCAAGATGAAAACTATCTTAAAGAACTCTTTAAGGGTAAGGT TTTAGTGATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTGCTCAAC GCATGA Protein sequence : MQLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLEDLKHFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDKQAISHKVYCLCGDGD LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAINDALEEAKKSTKPT LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPSESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKTKE KIHALKDFDFSAIHYPTFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLFVPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS DAFENTACMQIALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT QVVSVPCFDLLIEQDENYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 3e-98 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 8e-89 | 41 |
